View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10181_low_14 (Length: 201)

Name: NF10181_low_14
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10181_low_14
NF10181_low_14
[»] chr1 (4 HSPs)
chr1 (13-111)||(48043635-48043734)
chr1 (16-106)||(48051611-48051701)
chr1 (22-99)||(48056891-48056968)
chr1 (43-110)||(48045485-48045552)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 48043635 - 48043734
Alignment:
Q  13 caaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctagaaccagcagtggaatccc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48043635 caaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctagaaccagcagtggaatccc 48043734  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 48051611 - 48051701
Alignment:
Q  16 aggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtgga 106  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  48051611 aggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatcttgttacttagaaccagcagtgga 48051701  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
Q  22 acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag 99  Q
    ||||| |||||| ||||||| ||||  |||||||||||||||| | ||||||||||||||||||||||| ||||||||    
T  48056891 acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag 48056968  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
Q  43 tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc 110  Q
    |||| ||||||||||||||||||   ||||||||||||| |||||||||| |||||||| | ||||||    
T  48045485 tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc 48045552  T

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