View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10181_low_3 (Length: 354)
Name: NF10181_low_3
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10181_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 46530838 - 46530513
Alignment:
| Q |
14 |
aggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaatatttcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46530838 |
aggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaatatttcc |
46530739 |
T |
|
| Q |
114 |
caagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttattttgtctccaaatttgag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46530738 |
caagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttattttgtctccaaatttgag |
46530639 |
T |
|
| Q |
214 |
aaaacaggcttcactggagcattgaactactatagaaactttaacgtgtaatcctttgattctttgtgctacctctggttgttttccacaaatatatgtt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46530638 |
aaaacaggcttcactggagcattgaactactatagaaactttaacgtgtaatcctttgattctttgtgctacctttggttgttttccacaaatatatgtt |
46530539 |
T |
|
| Q |
314 |
gacaattctttttggtaaaatgtttg |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46530538 |
gacaattctttttggtaaaatgtttg |
46530513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 46523410 - 46523084
Alignment:
| Q |
14 |
aggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaatatttcc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||||||||| |
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|
| T |
46523410 |
aggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaagtaccctcacaactcggaaaactggtcctccaatatttcc |
46523311 |
T |
|
| Q |
114 |
caagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttattttgtctccaaatttgag |
213 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
46523310 |
caagggagagtttggaactggattcaactcagatactcctgacaccttaccctcttggcttacagaagatgaccttacttattttgtctccaaatttgag |
46523211 |
T |
|
| Q |
214 |
aaaacaggcttcactggagcattgaactactatagaaactttaacgtgtaatc-ctttgattctttgtgctacctctggttgttttccacaaatatatgt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
46523210 |
aaaacaggcttcactggagcattgaactactacagaaactttaacttgtaatctttttgattctttgtgctacctctggttgttttcctcaaatatatgt |
46523111 |
T |
|
| Q |
313 |
tgacaattctttttggtaaaatgtttg |
339 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
46523110 |
tgacaattctttttggtataatgtttg |
46523084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 46323541 - 46323852
Alignment:
| Q |
14 |
aggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaatatttcc |
113 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||| ||||||||||| |
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|
| T |
46323541 |
aggaaccgggcaaaatggaagctcagatggctgaagttggcactgcatatgtgatgaaaagtaccctcacaactcggaaaactggtcctccaatatttcc |
46323640 |
T |
|
| Q |
114 |
caagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttattttgtctccaaatttgag |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| || ||||||| || || |||||||| |||||||| || |||||||||||||| |||||||||||| |
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|
| T |
46323641 |
caagggagagtttggaactggattcaacccggacacccctgacaaattgccttcttggctcacagaagatgatcttgcttattttgtttccaaatttgag |
46323740 |
T |
|
| Q |
214 |
aaaacaggcttcactggagcattgaactactatagaaactttaacgtgtaatcctttgattctttgtgctacctctggttgttttccacaaatatatgtt |
313 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||| ||| ||||||| ||||||||| |||| | |||||| |||||| |||||||| ||| || |
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|
| T |
46323741 |
aaaacgggctttgttggaggattgaactactatagaaacttgaacttgtaatcttttgattctctgtggtgcctctgattgtttgccacaaatctatatt |
46323840 |
T |
|
| Q |
314 |
gacaattctttt |
325 |
Q |
| |
|
||| ||||||| |
|
|
| T |
46323841 |
tacatttctttt |
46323852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 46328019 - 46328270
Alignment:
| Q |
14 |
aggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaatatttcc |
113 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
46328019 |
aggaaccgggcgaaatggaagctcagatggctgaagttggcactacatatgtgatgaaaaatatcctcacaactcggaaaactggtcctccaatttttcc |
46328118 |
T |
|
| Q |
114 |
caagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttattttgtctccaaatttgag |
213 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| | ||| ||||||||||| |||||||| || |||||||||||||| || ||||||||| |
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|
| T |
46328119 |
caagggagagtatggaactgggttcaacccggatacccctgataacttgccctcttggctcacagaagatgatcttgcttattttgtttctaaatttgag |
46328218 |
T |
|
| Q |
214 |
aaaacaggcttcactggagcattgaactactatagaaactttaacgtgtaat |
265 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
46328219 |
aaaacaggctttactggaggattgaactactatagaaactttaacttgtaat |
46328270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 46519866 - 46519540
Alignment:
| Q |
14 |
aggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaatatttcc |
113 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||| |||||||||||||||||| |||||||| |||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
46519866 |
aggaacctggcaaaatagaagctgagatagctgaggttggcactgcatatgtgctgaaaaatgtcctcacaactcgcaaaactggtcctccaatacttcc |
46519767 |
T |
|
| Q |
114 |
caagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttattttgtctccaaatttgag |
213 |
Q |
| |
|
||| ||||||| |||||| |||||||| |||||||| || || ||||| ||| ||||||| |||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
46519766 |
caaaggagagtttggaacaggattcaatccggataccccagaaaccttgcccacttggctcacagaagacgatcttgcttattttgtctccaaatatgag |
46519667 |
T |
|
| Q |
214 |
aaaacaggcttcactggagcattgaactactatagaaactttaacgtgtaatcctttgattctttgtgctacctctggttgttttccacaaatatatgtt |
313 |
Q |
| |
|
|| || ||||||||||||| |||||| |||||||||||||||||| |||||| | || ||||||||||| || | |||||||| ||||||||| || |
|
|
| T |
46519666 |
aagactggcttcactggaggattgaattactatagaaactttaacttgtaattttctgtttctttgtgcttcc-ataattgttttcgacaaatataaatt |
46519568 |
T |
|
| Q |
314 |
gacaattctttttggtaaaatgtttgtg |
341 |
Q |
| |
|
||| ||||||||||| |||| |||||| |
|
|
| T |
46519567 |
gactattctttttggggaaatatttgtg |
46519540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 46464620 - 46464376
Alignment:
| Q |
11 |
cataggaaccaggcaaaatggaagctgagatggctgaagttggcactgcatatgtgatgaaaaatatcctcacaactcgccaaactggtcccccaatatt |
110 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| |||||||||||| || |||||| ||||||||||||||||||| || ||| |||||| ||||| | |
|
|
| T |
46464620 |
cataggaaccaggtaaaatggaagctaagatggttgaagttggcaccgcttatgtgctgaaaaatatcctcacaacacgggaaattggtcctccaatgct |
46464521 |
T |
|
| Q |
111 |
tcccaagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaa---gaccttgcttattttgtctccaaa |
207 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||||||||| |||||||| ||| |
|
|
| T |
46464520 |
tcccaacggcgagtacggaactggattcaacccggatatcccatacaccttgtcctcttggcttacagaagaagacgaccttgcttactttgtctctaaa |
46464421 |
T |
|
| Q |
208 |
tttgagaaaacaggcttcactggagcattgaactactatagaaac |
252 |
Q |
| |
|
||||| ||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
46464420 |
tttgacaaaacaggcttcactggaggattgaattactacagaaac |
46464376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 88663 - 88817
Alignment:
| Q |
97 |
ggtcccccaatatttcccaagggagagtatggaactggattcaacccggatactcctgacaccttaccctcttggcttacagaagaagaccttgcttatt |
196 |
Q |
| |
|
||||| ||||| || || || ||||||||||||||||||||||| ||||||| || || | |||||| ||||||||| | |||||||| |||| ||||| |
|
|
| T |
88663 |
ggtcctccaattttcccaaaaggagagtatggaactggattcaatccggatatgccagatatcttaccatcttggctttccgaagaagatcttgattatt |
88762 |
T |
|
| Q |
197 |
ttgtctccaaatttgagaaaacaggcttcactggagcattgaactactatagaaa |
251 |
Q |
| |
|
||| | ||||| | ||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
88763 |
atgttactaaattcaacaaaactggcttcactggagggttgaactactatagaaa |
88817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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