View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10181_low_5 (Length: 315)
Name: NF10181_low_5
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10181_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 158 - 302
Target Start/End: Original strand, 19229155 - 19229299
Alignment:
| Q |
158 |
atgatttctttgtatctttatgaattcactgtctttaacatgaattccataattaatttaaactctccaatttcctttttcggatttgtggaaattcact |
257 |
Q |
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| T |
19229155 |
atgatttctttgtatctttatgaattcactgtctttaacatgaattccataattaatttaaactctccaatttcctttttcggatttgtggaaattcact |
19229254 |
T |
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| Q |
258 |
tttcatatatttattgtgctacacaccagctctggaggagatatt |
302 |
Q |
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| T |
19229255 |
tttcatatatttattgtgctacacaccagctctggaggagatatt |
19229299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 19229013 - 19229082
Alignment:
| Q |
16 |
aagaaagcttagattcacaattcttattgttttatatacagataaaattcttgtcgtaatcgtcgttaga |
85 |
Q |
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| T |
19229013 |
aagaaagcttagattcacaattcttattgttttatatacagataaaattcttgtcgtaatcgttgttaga |
19229082 |
T |
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