View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10181_low_7 (Length: 288)
Name: NF10181_low_7
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10181_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 18660183 - 18659923
Alignment:
| Q |
17 |
acaactcttggtcttcaaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccat |
116 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
18660183 |
acaacacttggtcttcaaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtattacgtgagcttcaaggaactaccat |
18660084 |
T |
|
| Q |
117 |
cttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18660083 |
cttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaaaaagccaaagtaatcat |
18659984 |
T |
|
| Q |
217 |
tcttctggtttctataagtttttctttgatgataacaatgttattcgtctcaattatgatg |
277 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18659983 |
tcttctggcttctataagtttttctttgatgataacaatgttattcgtctcaattatgatg |
18659923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 21132015 - 21131761
Alignment:
| Q |
23 |
cttggtcttcaaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtg |
122 |
Q |
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|||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
21132015 |
cttggtcttcaaacacggcatcagatgctccgttagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaagtaccattttgtg |
21131916 |
T |
|
| Q |
123 |
gcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttct |
222 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
21131915 |
gcaaagctatgatttcccaaccaatactctccttcctaatcaaccactcactagatacacaaaacttgtttcttcaagaagccagagtaatcattcttct |
21131816 |
T |
|
| Q |
223 |
ggtttctataagtttttctttgatgataacaatgttattcgtctcaattatgatg |
277 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||| | ||||||||| ||||||||| |
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| T |
21131815 |
ggcttctataagtgtttctttgatgataacaatatcattcgtctcgattatgatg |
21131761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 23 - 277
Target Start/End: Complemental strand, 21113055 - 21112801
Alignment:
| Q |
23 |
cttggtcttcaaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtg |
122 |
Q |
| |
|
|||||||||||||||| |||||| ||||| |||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21113055 |
cttggtcttcaaacacggcatcagatgctccattagagttgtatcttagagaagatgggaatcttgtgttacgtgagcttcaaggacctaccatcttgtg |
21112956 |
T |
|
| Q |
123 |
gcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttct |
222 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
21112955 |
gcaaagctatgatttcccgacaaatactctccttcctaatcaacctctcactagatatacaaaccttgtttcttcaagaagccatagtaatcattcttct |
21112856 |
T |
|
| Q |
223 |
ggtttctataagtttttctttgatgataacaatgttattcgtctcaattatgatg |
277 |
Q |
| |
|
|| || |||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
21112855 |
ggcttttataagttgttctttgatgataacaatgttattcgtctcgattatgatg |
21112801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 33 - 277
Target Start/End: Complemental strand, 21124442 - 21124195
Alignment:
| Q |
33 |
aaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctat |
132 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| |
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| T |
21124442 |
aaacacagcatcagatgctccattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaagaactaccattttgggggaaagctat |
21124343 |
T |
|
| Q |
133 |
gatttcccaacaaatactctccttcctaatcaacctctcactag---atacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttct |
229 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||| ||||||||||||||||| |||| |
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| T |
21124342 |
gatttcccaacaaattctctccttcctaatcaacctctcactagataatacacaaaacttatttcttcaagaagccagagtaatcattcttctggcttct |
21124243 |
T |
|
| Q |
230 |
ataagtttttctttgatgataacaatgttattcgtctcaattatgatg |
277 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
21124242 |
ataagtgtttctttgatgataacaatgttattcgtctcgattatgatg |
21124195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 249
Target Start/End: Original strand, 21097227 - 21097423
Alignment:
| Q |
53 |
cattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaatactct |
152 |
Q |
| |
|
||||||| ||| |||||||| | ||||| ||||||||||| |||||||||||||||| | ||| |||||||| || | ||| | |||||| ||||||| |
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| T |
21097227 |
cattagaattgcatctcaaaaatgatggaaatcttgtgttgcgtgagcttcaaggaatcaacattttgtggcagagttttgactctccaacagatactct |
21097326 |
T |
|
| Q |
153 |
ccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttctataagtttttctttgatgat |
249 |
Q |
| |
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|||||| ||||||||| || ||||| | ||| ||||| ||||||| ||| | ||||||||||||||||| ||||||| ||| |||||||||||| |
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| T |
21097327 |
ccttccaggtcaacctcttacaagatatacaaagcttgtatcttcaataagtgagagtaatcattcttctggcttctatatgttcttctttgatgat |
21097423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 56 - 249
Target Start/End: Original strand, 21106849 - 21107042
Alignment:
| Q |
56 |
tagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtggcaaagctatgatttcccaacaaatactctcct |
155 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||| |||||||||||||||| || || |||||||| || | ||| | |||||| |||||||||| |
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| T |
21106849 |
tagagttgcatctcaaagatgatggaaatcttgtgttgcgtgagcttcaaggaatcacaattttgtggcagagttttgactctccaacagatactctcct |
21106948 |
T |
|
| Q |
156 |
tcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctggtttctataagtttttctttgatgat |
249 |
Q |
| |
|
||| ||||||||| || ||||| | ||| ||||| |||||||||| | |||||||||||| |||| ||||| ||||| | |||||||||| |
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| T |
21106949 |
tccaggtcaacctcttacaagatatacaaagcttgtagcttcaagaagtgagagtaatcattctactggcttctacaagttctactttgatgat |
21107042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 24 - 266
Target Start/End: Original strand, 39130722 - 39130964
Alignment:
| Q |
24 |
ttggtcttcaaacacagcatcaaatgcttcattagagttgtatctcaaagaagatggtaatcttgtgttacgtgagcttcaaggaactaccatcttgtgg |
123 |
Q |
| |
|
||||||||||||||||| |||||| || || ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
39130722 |
ttggtcttcaaacacagaatcaaacactccactagagttgtatctaaaagaagatggcaatcttgtgttacgtgagcttcaaggtactacgatcttgtgg |
39130821 |
T |
|
| Q |
124 |
caaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaagccaaagtaatcattcttctg |
223 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| || |||||||||||||||| |
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|
| T |
39130822 |
caaagctatgattttccaacaaatactctccttcctaatcaacctctcactagatacacaaaacttggttcctcaagaagtcagagtaatcattcttctg |
39130921 |
T |
|
| Q |
224 |
gtttctataagtttttctttgatgataacaatgttattcgtct |
266 |
Q |
| |
|
| ||||||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
39130922 |
gcttctataagttgttttttgatgataacaatattattcgtct |
39130964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 26700154 - 26700069
Alignment:
| Q |
118 |
ttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttcttcaagaag |
203 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||||||| ||||| | | ||| | ||||| || |||||||| |||||||| |
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|
| T |
26700154 |
ttgtggcaaagttttgatttcccaacagatactctccttcctgatcaagatttgactgggtacatgaaccttgtttcgtcaagaag |
26700069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 26735311 - 26735264
Alignment:
| Q |
118 |
ttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaa |
165 |
Q |
| |
|
||||||||||| | ||||||||||||| |||||||||||||| ||||| |
|
|
| T |
26735311 |
ttgtggcaaagttttgatttcccaacagatactctccttcctgatcaa |
26735264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 26676981 - 26676905
Alignment:
| Q |
118 |
ttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttc |
194 |
Q |
| |
|
||||||| ||||| |||||| |||||| |||| ||||||||| ||||| | |||| || ||||| ||||||||||| |
|
|
| T |
26676981 |
ttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatgaaacttgtttc |
26676905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 26689109 - 26689185
Alignment:
| Q |
118 |
ttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttc |
194 |
Q |
| |
|
||||||| ||||| |||||| |||||| |||| ||||||||| ||||| | |||| || ||||| ||||||||||| |
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|
| T |
26689109 |
ttgtggcgaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggtacatgaaacttgtttc |
26689185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 26693261 - 26693337
Alignment:
| Q |
118 |
ttgtggcaaagctatgatttcccaacaaatactctccttcctaatcaacctctcactagatacataaaacttgtttc |
194 |
Q |
| |
|
||||||||||||| |||||| |||||| |||| ||||||||| ||||| | |||| || |||| ||||||||||| |
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|
| T |
26693261 |
ttgtggcaaagctttgattttccaacagataccctccttcctgatcaaagtttcacaaggcacatgaaacttgtttc |
26693337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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