View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10182_high_16 (Length: 241)
Name: NF10182_high_16
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_high_16 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: scaffold0137 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 2925 - 3157
Alignment:
| Q |
1 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaactagattttactactga--------tgttgcaatcatatgtatcttgccggagtgtctcg |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2925 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaactagattttactactgaactaaagatgttgcaatcatatgtatcttgccggagtgtctcg |
3024 |
T |
|
| Q |
93 |
gcagtcatccttcaaaggtgacaatatcagtagactttgccatttgcatgtcttctatcctttgctcatgacacttaaactgtacctttttgaactggac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3025 |
gcagtcatccttcaaaggtgacaatatcagtagactttgccatttgcatgtcttctatcctttgctcatgacacttaaactgtacctttttgaactggac |
3124 |
T |
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| Q |
193 |
tgattctttgcgaaccgaactataccaaattgt |
225 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3125 |
tgattctttgcgaaccgaactataccaaattgt |
3157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3888582 - 3888814
Alignment:
| Q |
1 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaactagattttactactga--------tgttgcaatcatatgtatcttgccggagtgtctcg |
92 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3888582 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaactagattttactactgaactaaagatgttgcaatcatatgtatcttgccggagtgtctcg |
3888681 |
T |
|
| Q |
93 |
gcagtcatccttcaaaggtgacaatatcagtagactttgccatttgcatgtcttctatcctttgctcatgacacttaaactgtacctttttgaactggac |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3888682 |
gcagtcatccttcaaaggtgacaatatcagtagactttgccatttgcatgtcttctatcctttgctcatgacacttaaactgtacctttttgaactggac |
3888781 |
T |
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| Q |
193 |
tgattctttgcgaaccgaactataccaaattgt |
225 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3888782 |
tgattctttgcgaaccgaactataccaaattgt |
3888814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13806150 - 13806190
Alignment:
| Q |
1 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaac |
41 |
Q |
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||||||||||||||||||| |||||||||||||||| |||| |
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| T |
13806150 |
tcttatgtttattagttgaagtgaaaatgaaaacagaaaac |
13806190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 47364849 - 47364881
Alignment:
| Q |
3 |
ttatgtttattagttgaggtgaaaatgaaaaca |
35 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
47364849 |
ttatgtttattagttgaagtgaaaatgaaaaca |
47364881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29906639 - 29906679
Alignment:
| Q |
1 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaac |
41 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
29906639 |
tcttacgtttattagttgaagtgaaaatgaaaacagtaaac |
29906679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 36854679 - 36854734
Alignment:
| Q |
169 |
aaactgtacctttttgaactggactgattctttgcgaaccgaactataccaaattg |
224 |
Q |
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||||||||| ||||||||| | ||||||||||| |||||||||| |||||||||| |
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| T |
36854679 |
aaactgtacttttttgaaccgagctgattctttgtgaaccgaactgtaccaaattg |
36854734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12498258 - 12498298
Alignment:
| Q |
1 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaac |
41 |
Q |
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|
||||||||||||||||| | |||||||||||||||| |||| |
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| T |
12498258 |
tcttatgtttattagtttaagtgaaaatgaaaacagaaaac |
12498298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 43537598 - 43537566
Alignment:
| Q |
4 |
tatgtttattagttgaggtgaaaatgaaaacag |
36 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
43537598 |
tatgtttattagttgaagtgaaaatgaaaacag |
43537566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52906427 - 52906467
Alignment:
| Q |
1 |
tcttatgtttattagttgaggtgaaaatgaaaacagtaaac |
41 |
Q |
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||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
52906427 |
tcttatgattattagttgaagtgaaaatgaaaacagaaaac |
52906467 |
T |
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