View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10182_low_11 (Length: 349)

Name: NF10182_low_11
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10182_low_11
NF10182_low_11
[»] chr5 (3 HSPs)
chr5 (86-267)||(14417219-14417400)
chr5 (275-338)||(14417129-14417192)
chr5 (275-322)||(30654775-30654822)
[»] chr4 (1 HSPs)
chr4 (86-267)||(44512595-44512779)
[»] chr6 (1 HSPs)
chr6 (150-251)||(7912996-7913097)
[»] chr7 (2 HSPs)
chr7 (275-337)||(25035524-25035586)
chr7 (92-206)||(25035586-25035702)
[»] scaffold0209 (2 HSPs)
scaffold0209 (275-336)||(7464-7525)
scaffold0209 (275-336)||(20918-20979)
[»] chr8 (1 HSPs)
chr8 (275-336)||(8834257-8834318)


Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 86 - 267
Target Start/End: Complemental strand, 14417400 - 14417219
Alignment:
Q  86 gccctgtgtctagtgtatgagtggatgcaataataaactttatgatttgaggannnnnnnnngttgtcaattgcttagaccgatgttgatgggaattgag 185  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |         |||||||||||||||||| |||||||||||||||||||    
T  14417400 gccctgtgtctagtgtatgagtggatgcaataataaactttgtgatttgagaatttttttttgttgtcaattgcttagacggatgttgatgggaattgag 14417301  T
Q  186 ttcttgactatggagtgtttgtagctatgacaattcacttgcaaagaatggtgaatgacgagcattaccacaaagcattcaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14417300 ttcttgactatggagtgtttgtagctatgacaattcacttgcaaagaatggtgaatgacgagcattaccgcaaagcattcaa 14417219  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 275 - 338
Target Start/End: Complemental strand, 14417192 - 14417129
Alignment:
Q  275 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattcat 338  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  14417192 gcacttatggttgctgcaagttcaggggagatgagctcttctagagggatggtcagagattcat 14417129  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 30654775 - 30654822
Alignment:
Q  275 gcacttatggttgctgcaagttcacgggagatgaactcttctagaggg 322  Q
    |||||||||||||||||||| ||| ||||||||| || ||||||||||    
T  30654775 gcacttatggttgctgcaagctcaggggagatgagcttttctagaggg 30654822  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 86 - 267
Target Start/End: Original strand, 44512595 - 44512779
Alignment:
Q  86 gccctgtgtctagtgtatgagtggatgcaataataaactttatgatttgaggannnnnnnnngttg---tcaattgcttagaccgatgttgatgggaatt 182  Q
    |||||||||| ||||||||||||| |||||||||||  | |||||||||||||          |||   |||||||||||| |||||||||||||||||     
T  44512595 gccctgtgtcaagtgtatgagtgggtgcaataataagttctatgatttgaggattttttttctttgctgtcaattgcttaggccgatgttgatgggaatg 44512694  T
Q  183 gagttcttgactatggagtgtttgtagctatgacaattcacttgcaaagaatggtgaatgacgagcattaccacaaagcattcaa 267  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||| ||  |||||||||||    
T  44512695 gagttcttgactatggagagtttgtagctgtgacaattcacttgcaaagaatggagaatgacgagcatttccgtaaagcattcaa 44512779  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 7912996 - 7913097
Alignment:
Q  150 tgtcaattgcttagaccgatgttgatgggaattgagttcttgactatggagtgtttgtagctatgacaattcacttgcaaagaatggtgaatgacgagca 249  Q
    |||||||| ||||| |  ||||| ||||||||  ||||||||| ||||||| |||||||||| |||||||||||||||||| ||||| ||||||||| ||    
T  7912996 tgtcaatttcttaggctaatgttcatgggaatgtagttcttgattatggagagtttgtagctgtgacaattcacttgcaaaaaatggagaatgacgacca 7913095  T
Q  250 tt 251  Q
    ||    
T  7913096 tt 7913097  T

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Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 275 - 337
Target Start/End: Complemental strand, 25035586 - 25035524
Alignment:
Q  275 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattca 337  Q
    |||||| ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  25035586 gcacttgtggttgctgcaagttcaaggaagatgagctcttctagagggatggtcagagattca 25035524  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 25035702 - 25035586
Alignment:
Q  92 tgtctagtgtatgagtggatgcaataataaactttatgatttgaggannnnnnnnn--gttgtcaattgcttagaccgatgttgatgggaattgagttct 189  Q
    |||||||||||||||||||||||||||||| || | |||||||||||           ||||||||||||||||   |||||||||| |||| |||||||    
T  25035702 tgtctagtgtatgagtggatgcaataataagctctgtgatttgaggatttttttccttgttgtcaattgcttaggttgatgttgatgtgaatggagttct 25035603  T
Q  190 tgactatggagtgtttg 206  Q
    |||||||||||||||||    
T  25035602 tgactatggagtgtttg 25035586  T

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Target: scaffold0209 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 7464 - 7525
Alignment:
Q  275 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattc 336  Q
    |||||||||||||||||||||||| |||||| |  |||||||  |||| |||||||||||||    
T  7464 gcacttatggttgctgcaagttcaagggagacgtgctcttctctagggctggtcagagattc 7525  T

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Target: scaffold0209; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 336
Target Start/End: Original strand, 20918 - 20979
Alignment:
Q  275 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattc 336  Q
    |||||||||||||||||||||||| |||||| |  |||||||  |||| |||||||||||||    
T  20918 gcacttatggttgctgcaagttcaagggagacgtgctcttctctagggctggtcagagattc 20979  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 336
Target Start/End: Complemental strand, 8834318 - 8834257
Alignment:
Q  275 gcacttatggttgctgcaagttcacgggagatgaactcttctagagggatggtcagagattc 336  Q
    |||||||||||||||||||||| | |||||||| |||||| |  |||| |||||||||||||    
T  8834318 gcacttatggttgctgcaagtttaggggagatgcactcttttgtagggctggtcagagattc 8834257  T

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