View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10182_low_14 (Length: 337)
Name: NF10182_low_14
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 39721225 - 39720913
Alignment:
| Q |
10 |
cgttggacgactttcaccagataaccaaacatagacttggcataatttcactcctaattacaattgcaatgaaatgtcactttcctgtcttgtaccaaga |
109 |
Q |
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| T |
39721225 |
cgttggacgactttcaccggataaccaaacatagacttggcataatttcactcctaattacaattgcaatgcaatgtcactttcctgtcttgtaccaaga |
39721126 |
T |
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| Q |
110 |
gaacgaataatcatattagcaggnnnnnnn-agtacattggtcatatcaaatttcaaatttgtttaacaac-taaagaaagaaaattatgatagatgaca |
207 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39721125 |
gaacgaataatcatattagcaggttttttttagtacattggtcatatcccatttcaaatttgtttaacaacctaaagaaagaaaattatgatagatgaca |
39721026 |
T |
|
| Q |
208 |
tatagtccaatatagtatattactacctaccaagaatttattggctgcaatttataaaagcctccaaatgagtgttcctttttgaatgggcctccaattt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39721025 |
tatagtccaatatagtatattactacctaccaagaatttattggctgcaatttataaaagcctccaaatgagtgttcctttttgaataggcctccaattt |
39720926 |
T |
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| Q |
308 |
cattagaatgttc |
320 |
Q |
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||||||||||||| |
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| T |
39720925 |
cattagaatgttc |
39720913 |
T |
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