View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10182_low_18 (Length: 323)
Name: NF10182_low_18
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 313
Target Start/End: Original strand, 37558287 - 37558580
Alignment:
| Q |
20 |
gaggaaagcaggaagataaaggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagatggatgaacagaagagcc |
119 |
Q |
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| T |
37558287 |
gaggaaagcaggaagataaaggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagaaggatgaacagaagagca |
37558386 |
T |
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| Q |
120 |
ctgaagttcttaagaaggatgaaaagaagagcactcaaggtcttaatctaaagaaggatgacaagatgcctggtgtggatggtgacgactacggtgtaac |
219 |
Q |
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| T |
37558387 |
ctgaagttcttaagaaggatgaaaagaagagcactcaaggtcttaatctaaagaaggatgacaagatgcctggtgtggatggtgacgactatggtgtaac |
37558486 |
T |
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| Q |
220 |
ttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatcccttcttc |
313 |
Q |
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| T |
37558487 |
ttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatcccttcttc |
37558580 |
T |
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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 41553677 - 41553767
Alignment:
| Q |
19 |
agaggaaagcaggaagataaaggaaaaacagaaggaagcaatgatcactgacaataaacagaagagcactgaagatcttaagatggatgaa |
109 |
Q |
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| T |
41553677 |
agaggaaagcaagaaaataaaggaaaaaaacaaagaagcaatgatcattgacattaaacagaagagcacccaagatcttaagagggatgaa |
41553767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 41553803 - 41553892
Alignment:
| Q |
217 |
aacttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatcc |
306 |
Q |
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| T |
41553803 |
aacttcacaagctctatcaaattactcttttgtcaacagtgcagcagcggacttggctttcaaaatgacagaaaaaacatccaaggatcc |
41553892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 4444886 - 4444786
Alignment:
| Q |
213 |
gtgtaacttcgcaacctctaccaaattattcttttgtcaacaatgcagctgtggagttggctttcaaaatgactgaaaaatcactcaaggatcccttctt |
312 |
Q |
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||||||||| |||||||||| ||||||| |||||||||||||| ||||| | | ||||||| |||||||||||||| || ||||| |||||||||| |
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| T |
4444886 |
gtgtaactttgcaacctctaacaaattactcttttgtcaacaacgcagccgcaaacgtggcttttgaaatgactgaaaaaacattcaagaatcccttctt |
4444787 |
T |
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| Q |
313 |
c |
313 |
Q |
| |
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| T |
4444786 |
c |
4444786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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