View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10182_low_19 (Length: 313)
Name: NF10182_low_19
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 129 - 303
Target Start/End: Original strand, 2206870 - 2207044
Alignment:
| Q |
129 |
tttatgaattatttatgaaaatgcaataatacatatagatggaaaagaagaagnnnnnnnctattcaaatgagatgataaattatccgatgtaggaagag |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2206870 |
tttatgaattatttatgaaaatgcaataatacatatagatggaaaagaagaaaaaaaaaactattcaaatgagatgataaattatccgatgtaggaagag |
2206969 |
T |
|
| Q |
229 |
ttggaagaacttgaagaccaaacagcttctagcttgtattgcgatgaatcgcataaaatattgaaaattcctatg |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2206970 |
ttggaagaacttgaagaccaaacagcttctagcttgtattgcgatgaatcgcataaaatattgaaaattcctatg |
2207044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University