View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10182_low_2 (Length: 565)
Name: NF10182_low_2
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 155 - 504
Target Start/End: Complemental strand, 17613976 - 17613628
Alignment:
| Q |
155 |
cacaacaacttgaacttcatctaaattcatgacagtaaaaagttatttgctgttatgttggaagtacaagaggaacttgaagacgaggcataacaaaagg |
254 |
Q |
| |
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||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||| |||| |||||||| ||||||||||||||| |
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| T |
17613976 |
cacaacaacttgaacttcatctaaattgatagcagtaaaaagttatttgctattatgatggaagtacaataggagcttgaagagaaggcataacaaaagg |
17613877 |
T |
|
| Q |
255 |
ggttnnnnnnnnn-gagagaattgaggaaaaa-gggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaa |
352 |
Q |
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|||| |||||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
17613876 |
ggttaaaaaaaagagagagaattgaggaaaaaagggtcagaagttgccacaa-gtgatgacacatttttcttctaattggccaacctgggcatcttctaa |
17613778 |
T |
|
| Q |
353 |
tttacaaacattcaacatggcttcacaatatatatcacaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttct |
452 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17613777 |
tttacaaacattcaacatggcttcaaaatatatatcacaacaagtgaatctttcctcaag--gtacatacatagatatcaatccctgtacactaggttct |
17613680 |
T |
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| Q |
453 |
gcatgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
504 |
Q |
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| T |
17613679 |
gcgtgatatatgtccgttagcactgaaattaaggcgtaaagacaccatcatc |
17613628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 155 - 504
Target Start/End: Complemental strand, 17693694 - 17693361
Alignment:
| Q |
155 |
cacaacaacttgaacttcatctaaattcatgacagtaaaaagttatttgctgttatgttggaagtacaagaggaacttgaagacgaggcataacaaaagg |
254 |
Q |
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|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
17693694 |
cacaacaacttgaacttcatataaattcatggcagtaaaaagttgtttgctgttatgttggaa------------cttgaagacaaggcataacaaaagt |
17693607 |
T |
|
| Q |
255 |
ggttnnnnnnnnngagagaattgaggaaaaagggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaatt |
354 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
17693606 |
ggttaaaaaaaacaagagaattgaggaaaaagggtctgaagttgccacaa-gtgatgacacatttttcttctaatttgccaacctgggcatcttctaatt |
17693508 |
T |
|
| Q |
355 |
tacaaacattcaacatggcttcacaatatatatcacaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgc |
454 |
Q |
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| T |
17693507 |
tacaaacattcaacatggcttcacaatatatatcacaacaagtgaacctttcctcaag--gtacata-atagatatcaaaccctgtacactaagttctgc |
17693411 |
T |
|
| Q |
455 |
atgatatatgtctgttagcaatgaaattaaggcgtaaagacaccgtcatc |
504 |
Q |
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|||||| | | | ||||||| |||||||||||| |||||||||| ||||| |
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| T |
17693410 |
atgatagacgcccgttagcactgaaattaaggcataaagacaccatcatc |
17693361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 389 - 504
Target Start/End: Complemental strand, 17671324 - 17671209
Alignment:
| Q |
389 |
acaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactaggttctgcatgatatatgtctgttagcaatgaaattaaggcg |
488 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||||||| |
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| T |
17671324 |
acaacaagtgaaccattcatcaagtggtacatacatagatatcaatccctgtacactaggttctgcatgatagatgtccgttagcactgaaactaaggcg |
17671225 |
T |
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| Q |
489 |
taaagacaccgtcatc |
504 |
Q |
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||||||||| ||||| |
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| T |
17671224 |
aaaagacaccatcatc |
17671209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 17671422 - 17671327
Alignment:
| Q |
268 |
gagagaattgaggaaaaa-gggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaatttacaaacat |
363 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17671422 |
gagagaattgaggaaaaaagggtcagaagttgccacaa-gtgatgacacatttttcttctaatttgccaacctgggcatcttctaatttacaaacat |
17671327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 155 - 258
Target Start/End: Complemental strand, 17671579 - 17671476
Alignment:
| Q |
155 |
cacaacaacttgaacttcatctaaattcatgacagtaaaaagttatttgctgttatgttggaagtacaagaggaacttgaagacgaggcataacaaaagg |
254 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||| ||||| ||||||||||| |||| |||| |||| ||||||||||||||| |
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| T |
17671579 |
cacaacaacttgaacttcatctaaattgatagcagtaaaaagttatttgctattatgatggaagtacaataggagcttggagacaaggcataacaaaagg |
17671480 |
T |
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| Q |
255 |
ggtt |
258 |
Q |
| |
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|||| |
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| T |
17671479 |
ggtt |
17671476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 17657914 - 17657819
Alignment:
| Q |
268 |
gagagaattgaggaaaa-agggtaagaagttgccacaaagtgatggcacatttttcttctaatttgccaacctgggcatcttctaatttacaaacat |
363 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
17657914 |
gagagaattgaggaaaatagggtcagaagttgccacaa-gtgatgacacatttttcttctaatttgcaaacctgagcatcttctaatttacaaacat |
17657819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 389 - 447
Target Start/End: Complemental strand, 17657816 - 17657758
Alignment:
| Q |
389 |
acaacaagtgaacctttcctcaagtagtacatacatagatatcaatccctgtacactag |
447 |
Q |
| |
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|||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||| |
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| T |
17657816 |
acaacaagtgaaccattcatcaagtggtacatacatagatatcaattcctgtacactag |
17657758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17693897 - 17693849
Alignment:
| Q |
19 |
atgcctccaatatatttgttttgattgcatcaaagctgcttaataccaa |
67 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
17693897 |
atgcctccaatttatttgttttgattgcatcaaagctacttaataccaa |
17693849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Complemental strand, 17613569 - 17613540
Alignment:
| Q |
509 |
aaggttaggtcactcttcacaagcaccata |
538 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17613569 |
aaggttaggtcactcttcacaagcaccata |
17613540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Complemental strand, 17626754 - 17626725
Alignment:
| Q |
509 |
aaggttaggtcactcttcacaagcaccata |
538 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
17626754 |
aaggttaggtcactcttcacaagcaccata |
17626725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 538
Target Start/End: Complemental strand, 17671150 - 17671121
Alignment:
| Q |
509 |
aaggttaggtcactcttcacaagcaccata |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
17671150 |
aaggttaggtcactcttcacaagcaccata |
17671121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17614178 - 17614130
Alignment:
| Q |
19 |
atgcctccaatatatttgttttgattgcatcaaagctgcttaataccaa |
67 |
Q |
| |
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||||||||||| | ||| ||||||||||||||||||| |||||| |||| |
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| T |
17614178 |
atgcctccaattttttttttttgattgcatcaaagctacttaatgccaa |
17614130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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