View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10182_low_20 (Length: 297)

Name: NF10182_low_20
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10182_low_20
NF10182_low_20
[»] chr5 (5 HSPs)
chr5 (107-291)||(3640880-3641064)
chr5 (196-291)||(16085193-16085288)
chr5 (196-291)||(16088116-16088211)
chr5 (147-289)||(3627820-3627959)
chr5 (207-289)||(14837182-14837264)
[»] chr1 (3 HSPs)
chr1 (145-291)||(19033698-19033845)
chr1 (147-288)||(38968492-38968633)
chr1 (213-288)||(28830745-28830820)
[»] chr4 (3 HSPs)
chr4 (153-293)||(14058985-14059126)
chr4 (153-291)||(22462369-22462508)
chr4 (219-291)||(23544624-23544696)
[»] chr8 (2 HSPs)
chr8 (151-291)||(38643686-38643827)
chr8 (219-291)||(8263424-8263496)
[»] chr2 (3 HSPs)
chr2 (145-289)||(7505022-7505167)
chr2 (145-288)||(26973381-26973524)
chr2 (196-291)||(26968905-26969000)
[»] chr7 (1 HSPs)
chr7 (151-288)||(47204872-47205010)
[»] chr6 (1 HSPs)
chr6 (145-291)||(19229589-19229732)
[»] chr3 (3 HSPs)
chr3 (219-291)||(53731311-53731383)
chr3 (220-291)||(53726830-53726901)
chr3 (196-268)||(42872017-42872089)
[»] scaffold0427 (1 HSPs)
scaffold0427 (148-290)||(5738-5880)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 107 - 291
Target Start/End: Complemental strand, 3641064 - 3640880
Alignment:
Q  107 ttgttgtattttatgcgtcggtaatattgatttgtacggcagcaaccgcaacttcaaataacaacgaactagatttggaagatgaaccggaaagtaaacc 206  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3641064 ttgttgtattttatgcgtcggtaatattgatttgtacgatagcaaccgcaacttcaaacaacaacgaactagatttggaagatgaaccggaaagtaaacc 3640965  T
Q  207 tgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3640964 tgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatcctcctcaatatgcgcaaactccc 3640880  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 16085193 - 16085288
Alignment:
Q  196 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| | |||||||||||    
T  16085193 gaaagtaaacctgcaacattgaacacgttagtattaacctcaggcgtcacgaagactgtccttggaatttatccgcctcaatgtacgcaaactccc 16085288  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 16088116 - 16088211
Alignment:
Q  196 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||||||||||||||| |||||||||||||||||||||||  || ||||||| || |||||||||||||||||| | ||||| |||||||||||||    
T  16088116 gaaagtaaacctgcaaaattgaacacgttagtattaacctagggtgtcacgaagattgtccttggaatttatccacatcaatgtgcgcaaactccc 16088211  T

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Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 289
Target Start/End: Original strand, 3627820 - 3627959
Alignment:
Q  147 agcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcac 245  Q
    ||||||||||||||||||||||||||||| | ||| || || |  |||  ||||||||||||| || ||    ||||||||||||||| ||||||||||     
T  3627820 agcaaccgcaacttcaaataacaacgaaccaaattctgcaaaacaaactagaaagtaaacctgtaaaat----cacgttagtattaacttgaggcgtcag 3627915  T
Q  246 gaggactgtccttggaatttatccccctcaatatgcgcaaactc 289  Q
    ||  |||||||||||||||||||| | ||||| |||||||||||    
T  3627916 gaatactgtccttggaatttatccgcttcaatgtgcgcaaactc 3627959  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 14837182 - 14837264
Alignment:
Q  207 tgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactc 289  Q
    ||||| |||||||||||||||||||||||||||| ||| || | ||||| ||||||||| ||| ||||||| |||||||||||    
T  14837182 tgcaaaattgaacacgttagtattaacctgaggcatcatgaaggctgtcattggaatttgtccgcctcaatgtgcgcaaactc 14837264  T

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Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 19033698 - 19033845
Alignment:
Q  145 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 243  Q
    ||||| ||||||||||| | ||||||||||| ||||| || || |  |||  || ||||||||||||| |||||||||||||||||||||||||||||||    
T  19033698 gcagccaccgcaacttcgagtaacaacgaaccagattctgcaaaacaaactagacagtaaacctgcaaaattgaacacgttagtattaacctgaggcgtc 19033797  T
Q  244 acgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  19033798 acgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccc 19033845  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 147 - 288
Target Start/End: Complemental strand, 38968633 - 38968492
Alignment:
Q  147 agcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcac 245  Q
    |||||||||||||||||||||||||||||  |||| || ||||| |||  |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  38968633 agcaaccgcaacttcaaataacaacgaaccggattctgcaagattaactagaaagtaaacctgcaa-attgaacatgttagtattaacctgaggcgtcac 38968535  T
Q  246 gaggactgtccttggaatttatccccctcaatatgcgcaaact 288  Q
    || ||||||||||  ||||||||| ||||| | |||| |||||    
T  38968534 gaagactgtccttaaaatttatccgcctcagtgtgcgtaaact 38968492  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 288
Target Start/End: Original strand, 28830745 - 28830820
Alignment:
Q  213 attgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaact 288  Q
    ||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| |||| || | ||||||||    
T  28830745 attgaacacgttagtattaacctaaggcgtcatgaggactgttcttggaatttatccacctccatgtacgcaaact 28830820  T

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Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 153 - 293
Target Start/End: Complemental strand, 14059126 - 14058985
Alignment:
Q  153 cgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggac 251  Q
    ||||||||||||||||||||||| ||||| || || |  |||   ||||||||||||||| ||||||  ||||||||||||||||||||||||||| |||    
T  14059126 cgcaacttcaaataacaacgaaccagattctgcaaaacaaactacaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtcacgaagac 14059027  T
Q  252 tgtccttggaatttatccccctcaatatgcgcaaactcccta 293  Q
    |||||||||||||||||| ||||||| |||||||||||||||    
T  14059026 tgtccttggaatttatccgcctcaatgtgcgcaaactcccta 14058985  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 291
Target Start/End: Complemental strand, 22462508 - 22462369
Alignment:
Q  153 cgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggac 251  Q
    |||||||||||||||||| |||| ||||| |  |||| ||||| |||||||||| || || |||||| |||||||||||||| |||||||||||||||||    
T  22462508 cgcaacttcaaataacaatgaaccagattctacaagacgaaccagaaagtaaacttgtaaaattgaatacgttagtattaacatgaggcgtcacgaggac 22462409  T
Q  252 tgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||| ||||||||||||| ||||| | |||| ||||||||    
T  22462408 tgtctttggaatttatccgcctcagtgtgcggaaactccc 22462369  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 23544696 - 23544624
Alignment:
Q  219 cacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  23544696 cacgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccacctcaatgtgcgcaaactccc 23544624  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 291
Target Start/End: Original strand, 38643686 - 38643827
Alignment:
Q  151 accgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgagg 249  Q
    ||||||||||||||||||| ||||| ||||| || || |  |||  |||||||||||||||| ||||||  ||||||||||||||||||||||||||| |    
T  38643686 accgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtcacgaag 38643785  T
Q  250 actgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
T  38643786 actgtccttgaaatttatccgcctcaatgtgcgcaaactccc 38643827  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 8263496 - 8263424
Alignment:
Q  219 cacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| ||||    
T  8263496 cacgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaattccc 8263424  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 7505022 - 7505167
Alignment:
Q  145 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 243  Q
    ||||| ||||||||||||||||||| ||||| ||||| || || |  |||  |||||||||||||||| ||||||  ||||||||||||||||||| |||    
T  7505022 gcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggtgtc 7505121  T
Q  244 acgaggactgtccttggaatttatccccctcaatatgcgcaaactc 289  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||    
T  7505122 acgaagactgtccttgaaatttatccgcctcaatatgcgcaaactc 7505167  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 26973381 - 26973524
Alignment:
Q  145 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 243  Q
    ||||| ||||||||||||||||||| ||||| ||||| || || |  |||  |||||||||||||||| ||||||  |||||||||||||||||||||||    
T  26973381 gcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgcaaaattgaatgcgttagtattaacctgaggcgtc 26973480  T
Q  244 acgaggactgtccttggaatttatccccctcaatatgcgcaaact 288  Q
    || | |||||||||||| |||||||| ||||||| ||||||||||    
T  26973481 acaaagactgtccttgg-atttatccgcctcaatgtgcgcaaact 26973524  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 26968905 - 26969000
Alignment:
Q  196 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||||||||||||||| ||||||   |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||| ||||    
T  26968905 gaaagtaaacctgcaaaattgaatgtgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtacgcaaaatccc 26969000  T

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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 151 - 288
Target Start/End: Complemental strand, 47205010 - 47204872
Alignment:
Q  151 accgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgagg 249  Q
    ||||||||||||||||||| ||||  ||||| || || |  |||  ||||||||| |||||| |||||| |||||||||||||||||||||||||||| |    
T  47205010 accgcaacttcaaataacatcgaatcagattctgcaaaacaaactagaaagtaaatctgcaaaattgaatacgttagtattaacctgaggcgtcacgaag 47204911  T
Q  250 actgtccttggaatttatccccctcaatatgcgcaaact 288  Q
    ||||||||| |||||||||| ||||||| ||||||||||    
T  47204910 actgtccttagaatttatccgcctcaatgtgcgcaaact 47204872  T

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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 145 - 291
Target Start/End: Original strand, 19229589 - 19229732
Alignment:
Q  145 gcagcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtc 243  Q
    ||||| ||||||||||||||||||| ||||| ||||| || || |  |||  ||||||||||||| || ||    |||||||||||||||||||||||||    
T  19229589 gcagccaccgcaacttcaaataacaccgaaccagattctgcaaaacaaactagaaagtaaacctgtaaaat----cacgttagtattaacctgaggcgtc 19229684  T
Q  244 acgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  19229685 acgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccc 19229732  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 53731311 - 53731383
Alignment:
Q  219 cacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  53731311 cacgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccc 53731383  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 53726830 - 53726901
Alignment:
Q  220 acgttagtattaacctgaggcgtcacgaggactgtccttggaatttatccccctcaatatgcgcaaactccc 291  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||    
T  53726830 acgttagtattaacctgaggcgtcacgaagactgtccttggaatttatccgcctcaatgtgcgcaaactccc 53726901  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 42872089 - 42872017
Alignment:
Q  196 gaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacgaggactgtccttggaatttatc 268  Q
    ||||||||||||| || |||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||    
T  42872089 gaaagtaaacctgtaaaattgaatacgttagtattaacctgaggcgtcacgaagactgccattggaatttatc 42872017  T

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Target: scaffold0427 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 290
Target Start/End: Complemental strand, 5880 - 5738
Alignment:
Q  148 gcaaccgcaacttcaaataacaacgaactagatt-tggaagatgaaccggaaagtaaacctgcaagattgaacacgttagtattaacctgaggcgtcacg 246  Q
    |||||||||||||||||||||||||||||||||| || || |  |||  |||| ||||||||||| ||| ||   | ||| |||||||||||||||||||    
T  5880 gcaaccgcaacttcaaataacaacgaactagattctgcaaaacaaactagaaattaaacctgcaaaattaaatg-gatagcattaacctgaggcgtcacg 5782  T
Q  247 aggactgtccttggaatttatccccctcaatatgcgcaaactcc 290  Q
    | ||||||| ||||||||||||| ||||||| ||||| ||||||    
T  5781 aagactgtcattggaatttatccgcctcaatgtgcgctaactcc 5738  T

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