View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10182_low_21 (Length: 295)
Name: NF10182_low_21
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 835672 - 835941
Alignment:
| Q |
19 |
cctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcatattgaccatcatgactttgtcaggccgttttattccgtctcattct |
118 |
Q |
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| T |
835672 |
cctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcacattgaccatcatgactttgtcaggccgttttattccgtctcattct |
835771 |
T |
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| Q |
119 |
tgaacgaagctaaaatattatttggttcaaatctgaaagcaattcaacccggagagttttcgggtcctgcttctatttctttgcctctagggtaagctac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
835772 |
tgaacgaagctaaaatattatttggttcaaatctgaaagaaattcaacccggagagttttcgggtcctgcttctatttctttgcctctagggtaagctac |
835871 |
T |
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| Q |
219 |
ttattttccattttcttgtgacttctcatgaatcaaatttggatcatgacctttattttaattccctatg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
835872 |
ttattttccattttcttgtgacttctcatgaatcaaatttggatcatgacctttattttaattccctatg |
835941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 813939 - 814123
Alignment:
| Q |
19 |
cctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcatattgaccatcatgactttgtcaggccgttttattccgtctcattct |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
813939 |
cctgacagttgcattgtcaacatatatgatgtaggggactgcattcctcctcatattgaccatcatgactttgtcaggccgttttattccgtctctttct |
814038 |
T |
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| Q |
119 |
tgaacgaagctaaaatattatttggttcaaatctgaaagcaattcaacccggagagttttcgggtcctgcttctatttctttgcc |
203 |
Q |
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| T |
814039 |
tgaacaaagctaaaatattatttggttcaaatttgaaagctgttcgtccaggagagttttttggtcccgcttcgatttctttgcc |
814123 |
T |
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