View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10182_low_22 (Length: 284)
Name: NF10182_low_22
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 40940825 - 40941094
Alignment:
| Q |
1 |
gaaatttgctatacaggtcaaagtttgaacatttttgtcccaaataacttactcataannnnnnngctgatttatttaaatgtgctgtagaattttgcaa |
100 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
40940825 |
gaaattcgctatacaggtcaaaatttgaacatttttgtcccaaataacttactcataatttttttgctgatttatttaaatgtgctgtagaatttcgcaa |
40940924 |
T |
|
| Q |
101 |
agagtttacttgatgttgcggataatttgggaagagcttcatcagttgtaaaagaaagtttttccaaaattgatacgtcaagtga---ctccgctgaagc |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40940925 |
agagtttacttgatgttgcggataatttgggaagagcttcatcagttgtaaaagaaagtttttccaaaattgatacgtcaagtgactcctccgctgaagc |
40941024 |
T |
|
| Q |
198 |
agtgaaactcctgaagacacttctggaaggtgttgaaatgactgagaaacaactttcagaggtagagtgt |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40941025 |
ggtgaaactcctgaagacacttctggaaggtgttgaaatgactgagaaacaactttcagaggtagagtgt |
40941094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 86 - 263
Target Start/End: Original strand, 21505120 - 21505297
Alignment:
| Q |
86 |
tgtagaattttgcaaagagtttacttgatgttgcggataatttgggaagagcttcatcagttgtaaaagaaagtttttccaaaattgatacgtcaagtga |
185 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||| |||||||| | | | || |
|
|
| T |
21505120 |
tgtagagttttgccaagagtttacttgatgttgctgacaatttgggaagagcttcttcagttgtaaaggacagtttttcaaaaattgaatcacctaaaga |
21505219 |
T |
|
| Q |
186 |
ctccgctgaagcagtgaaactcctgaagacacttctggaaggtgttgaaatgactgagaaacaactttcagaggtaga |
263 |
Q |
| |
|
|| | | |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21505220 |
atctgatcaagccgcaccactcctgaaaacacttctggaaggtgttgaaatgactgagaaacaacttgcagaggtaga |
21505297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University