View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10182_low_27 (Length: 249)
Name: NF10182_low_27
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 42413348 - 42413105
Alignment:
| Q |
1 |
cattacagcagaggaaaaccctgaaaaccacgagccagaggattttgcagccaccccctcagtctccaatatctcaaacaacatatacctcattgaaacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42413348 |
cattacagcagaggaaaaccctgaaaaccacgagccagaggattttgcagccaccccctcagtctccaatatctcaaacaacatataccttgttgaaacc |
42413249 |
T |
|
| Q |
101 |
tcatttttcaactctcatttttctagattgctttgataaatttcaacataaaacccatgtcaaattttcaatttttagctctttttggtcttgatcaccg |
200 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42413248 |
tcatttttcaactctcttttttctggattgctttgataaatttcaacataaaacccatgtcaaattttcaatttttagctctttttggtcttgatcaccg |
42413149 |
T |
|
| Q |
201 |
ttggggaaatcttgtttctgagaaagttgagtgcctttgcttct |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42413148 |
ttggggaaatcttgtttctgagaaagttgagtgcttttgcttct |
42413105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University