View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10182_low_28 (Length: 243)
Name: NF10182_low_28
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_28 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 2207734 - 2207501
Alignment:
| Q |
11 |
cagagagagtataagaataacgtttgagaagacgtgaatttattatatgnnnnnnnnnaaaaa-tgtgttaagatatgtgagctaacaatgttttcttat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
2207734 |
cagagagagtataagaataacgtttgagaagacgtgaatctattatatgttttttttaaaaaaatgtgttaagatatgtgagctaacaatgttttcttct |
2207635 |
T |
|
| Q |
110 |
ggcactgggattttaaatcatcatcaaatcacatttagataaactaatgaggttgtgagttcaactatccttgtcgatgtgatgatatttttggtgtgtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2207634 |
ggcactgggattttaaatcatcatcaaatcacatttagataaactaatgaggttgtgagttcaactatccttgtcgatgtgatgatatttttggtgtgtt |
2207535 |
T |
|
| Q |
210 |
tacagtaactagttgtgtaagtactttaactttt |
243 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| |
|
|
| T |
2207534 |
tacagtaactagttgtgtaagcactttaaatttt |
2207501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University