View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10182_low_3 (Length: 516)

Name: NF10182_low_3
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10182_low_3
NF10182_low_3
[»] chr1 (3 HSPs)
chr1 (27-503)||(29990520-29990996)
chr1 (34-503)||(16502567-16503035)
chr1 (34-502)||(24431671-24432138)
[»] chr3 (1 HSPs)
chr3 (60-493)||(53017188-53017620)
[»] chr6 (3 HSPs)
chr6 (34-502)||(17450720-17451187)
chr6 (86-476)||(14825487-14825876)
chr6 (443-503)||(5241905-5241965)
[»] chr4 (3 HSPs)
chr4 (128-494)||(20670117-20670483)
chr4 (90-156)||(52392977-52393043)
chr4 (217-307)||(52392858-52392948)
[»] chr7 (1 HSPs)
chr7 (148-464)||(12544153-12544466)
[»] chr5 (1 HSPs)
chr5 (239-455)||(15269032-15269249)


Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 27 - 503
Target Start/End: Original strand, 29990520 - 29990996
Alignment:
27 aaagtgttaaacaacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatatctggggtcctactcccac 126  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
29990520 aaagtgctaaacaacctgctttatcttttcataaatgtacatccatttcagcttcaccgtttgatctagtgcattctgatatttggggtcctcctcccac 29990619  T
127 acctactatgggaggtgctcggtattttgttctctttattgatgattattctcatttcacatggatagatatgatnnnnnnntagacacgagcttactca 226  Q
    |||||||||| |||||  || |||||||||| | ||||||||||||||||||| ||||||||||||| |||||||       |||||| |||||| ||||    
29990620 acctactatgagaggttttcagtattttgttatatttattgatgattattctcgtttcacatggatatatatgatgaaaaa-tagacatgagcttcctca 29990718  T
227 aatttacatcaattttgccaaaatgattcaaacacaattttct-aaagtaattaaagttttccaacgagataatgccatggaatatcgtgattctaaact 325  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
29990719 aatttacatcaattttgccaaaatgattcaaacacaatttttttaaagtcattaaagttttccgacgagataatgccatggaatatcgtgattctaaact 29990818  T
326 cttgtcttttcttagtgagcagggtacattttctgaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattctt 425  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||    
29990819 cttgtcttttcttagtgagcatggtacattgtctgaattttcttgtccatacacatctcaacaaaatggtcgcgctgagagaaagcatcattacattctt 29990918  T
426 gactcagtctgtgccatgcttatctcagcttcttgtccataacgtgcttggggggaagctgctcttactgatgtccat 503  Q
    ||||||||||||| |||||||||||| || ||||||||| ||||||||||||| |||||||||||||||| |||||||    
29990919 gactcagtctgtgtcatgcttatctcggcctcttgtccagaacgtgcttggggtgaagctgctcttactgctgtccat 29990996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 34 - 503
Target Start/End: Original strand, 16502567 - 16503035
Alignment:
34 taaacaacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatatctggggtcctactcccacacctact 133  Q
    ||||||||| || || |||||  |||||||||| |||||||||| |||||| |||||||| |||||||||||||| ||||||| | |||||||||||||     
16502567 taaacaaccagccttgtctttcaataaaagtacttccatttcagtttcaccatttgatcttgtgcattctgatatttggggtcatgctcccacacctacg 16502666  T
134 atgggaggtgctcggtattttgttctctttattgatgattattctcatttcacatggatagatatgatnnnnnnntagacacgagcttactcaaatttac 233  Q
    ||||||||| || | ||||||||| | |||||||||||||||||||  || ||||||||| |||||||       |||||| |||||| |||||||||||    
16502667 atgggaggttctagatattttgttatatttattgatgattattctcgctttacatggatatatatgatgaaaaa-tagacatgagcttcctcaaatttac 16502765  T
234 atcaattttgccaaaatgattcaaacacaattttctaaagtaattaaagttttccaacgagataatgccatggaatatcgtgattctaaactcttgtctt 333  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |  |||||||||| |||||||||||||||||||||||||||| | |    
16502766 atcaattttgccaaaatgattcaaacataattttctaaagtcattaaagtttttcggcgagataatgtcatggaatatcgtgattctaaactcttgacat 16502865  T
334 ttcttagtgagcagggtacattttctgaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattcttgactcagt 433  Q
    |||||||||| |||||||| || | ||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||    
16502866 ttcttagtgatcagggtaccttgtttgaattttcatgtccatatacatctcaacagaatggtcgcgctgagagaaagcatcgttacattcttgactcagt 16502965  T
434 ctgtgccatgcttatctcagcttcttgtccataacgtgcttggggggaagctgctcttactgatgtccat 503  Q
    ||||||||||| ||||||||| || ||| || |||| |||||||| ||||| |||||||| | |||||||    
16502966 ctgtgccatgcatatctcagcctcatgttcagaacgcgcttggggtgaagccgctcttaccgctgtccat 16503035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 34 - 502
Target Start/End: Original strand, 24431671 - 24432138
Alignment:
34 taaacaacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatatctggggtcctactcccacacctact 133  Q
    ||||||||| ||||| || ||| ||||||||||    ||||||||||||||||||||||| || || |||||||| ||||| ||| ||||||| |||||     
24431671 taaacaaccagctttgtcatttaataaaagtactaatatttcagcttcaccgtttgatcttgtccactctgatatttggggacctgctcccactcctaca 24431770  T
134 atgggaggtgctcggtattttgttctctttattgatgattattctcatttcacatggatagatatgatnnnnnnntagacacgagcttactcaaatttac 233  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||| ||| ||||||||| |  ||||       | | || |||||| |||||||||||    
24431771 atgggaggttctcggtattttgttttgtttattgatgattattctcgttttacatggatatacttgatgaaaaa-tcgtcatgagcttcctcaaatttac 24431869  T
234 atcaattttgccaaaatgattcaaacacaattttctaaagtaattaaagttttccaacgagataatgccatggaatatcgtgattctaaactcttgtctt 333  Q
    || || ||||| ||||||||||||||||||||||||||| | ||||||||||| |  ||||||||||||||||||||||||||||||||||||||   ||    
24431870 attaagtttgcaaaaatgattcaaacacaattttctaaaattattaaagtttttcgccgagataatgccatggaatatcgtgattctaaactcttagatt 24431969  T
334 ttcttagtgagcagggtacattttctgaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattcttgactcagt 433  Q
    ||||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||  ||    
24431970 ttcttggtgagcagggtaccttgtctgaattctcttgtccatatacatctcaacaaaatggtcgtgctgagagaaaacatcgtcacattcttgactttgt 24432069  T
434 ctgtgccatgcttatctcagcttcttgtccataacgtgcttggggggaagctgctcttactgatgtcca 502  Q
    | ||||||||||||||||||| ||||||||  ||||||||||||| |||||| ||||||||| ||||||    
24432070 ccgtgccatgcttatctcagcctcttgtcctgaacgtgcttggggtgaagcttctcttactgctgtcca 24432138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 60 - 493
Target Start/End: Complemental strand, 53017620 - 53017188
Alignment:
60 aaagtacatccatttcagcttcaccgtttgatctagtgcattctgatatctggggtcctactcccacacctactatgggaggtgctcggtattttgttct 159  Q
    ||||||| |||||||||| |||||| |||||| ||||||||||| |||| ||||||||| ||||||||||||||||||||||| |||| ||| |||||||    
53017620 aaagtacttccatttcagtttcaccatttgatatagtgcattctaatatttggggtcctgctcccacacctactatgggaggttctcgttatattgttct 53017521  T
160 ctttattgatgattattctcatttcacatggatagatatgatnnnnnnntagacacgagcttactcaaatttacatcaattttgccaaaatgattcaaac 259  Q
     |||||||||||||||||||  || ||||||||| |||||||       ||||||||||||| |||| ||||||||||||||||||||||||||||||||    
53017520 atttattgatgattattctcgctttacatggatatatatgatgaaaaa-tagacacgagcttcctcatatttacatcaattttgccaaaatgattcaaac 53017422  T
260 acaattttctaaagtaattaaagttttccaacgagataatgccatggaatatcgtgattctaaactcttgtcttttcttagtgagcagggtacattttct 359  Q
    ||||||||||||||| |||||||| || |   |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| || |||    
53017421 acaattttctaaagtcattaaagtctttcggtgagataatgccatgaaatatcgtgattctaaactcttgtcatttcttagtgagcagggtaccttgtct 53017322  T
360 gaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattcttgactcagtctgtgccatgcttatctcagcttctt 459  Q
    |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |    
53017321 gaattttcatgtccatacacatctcaacaaaatggtcgtgctgagagaaagcatcgtcacattcttgactcagtccgtgccatgcttatctcagcctcgt 53017222  T
460 gtccataacgtgcttggggggaagctgctcttac 493  Q
    ||||| |||  |||||||  ||||| ||||||||    
53017221 gtccagaacacgcttgggatgaagccgctcttac 53017188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 223; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 34 - 502
Target Start/End: Original strand, 17450720 - 17451187
Alignment:
34 taaacaacctgctttatcttttcataaaagtacatccatttcagcttcaccgtttgatctagtgcattctgatatctggggtcctactcccacacctact 133  Q
    ||||||||| ||||| || ||| ||||||||||    ||||||||||||||||||||||| || || |||||||| ||||| ||| ||||||| |||||     
17450720 taaacaaccagctttgtcatttaataaaagtactaatatttcagcttcaccgtttgatcttgtccactctgatatttggggacctgctcccactcctaca 17450819  T
134 atgggaggtgctcggtattttgttctctttattgatgattattctcatttcacatggatagatatgatnnnnnnntagacacgagcttactcaaatttac 233  Q
    ||||||||| |||||||||||||| | ||||||||||||||||||| ||| ||||||||| |  ||||       | | || |||||| |||||||||||    
17450820 atgggaggttctcggtattttgttttgtttattgatgattattctcgttttacatggatatacttgatgaaaaa-tcgtcatgagcttcctcaaatttac 17450918  T
234 atcaattttgccaaaatgattcaaacacaattttctaaagtaattaaagttttccaacgagataatgccatggaatatcgtgattctaaactcttgtctt 333  Q
    || || ||||| ||||||||||||||||||||||||||| | ||||||||||| |  ||||||||||||||||||||||||||||||||||||||   ||    
17450919 attaagtttgcaaaaatgattcaaacacaattttctaaaattattaaagtttttcgccgagataatgccatggaatatcgtgattctaaactcttagatt 17451018  T
334 ttcttagtgagcagggtacattttctgaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattcttgactcagt 433  Q
    ||||| ||||||||||||| || |||||||| ||||||||||| |||||||||||||| ||||| ||||||||||| |||||||||||||||||||| ||    
17451019 ttcttggtgagcagggtaccttgtctgaattctcttgtccatatacatctcaacaaaatggtcgtgctgagagaaaacatcgtcacattcttgactctgt 17451118  T
434 ctgtgccatgcttatctcagcttcttgtccataacgtgcttggggggaagctgctcttactgatgtcca 502  Q
    | ||||||||||||||||||| ||||||||  ||||||||||||| |||||| ||||||||| ||||||    
17451119 ccgtgccatgcttatctcagcctcttgtcctgaacgtgcttggggtgaagcttctcttactgctgtcca 17451187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 86 - 476
Target Start/End: Original strand, 14825487 - 14825876
Alignment:
86 tttgatctagtgcattctgatatctggggtcctactcccacacctactatgggaggtgctcggtattttgttctctttattgatgattattctcatttca 185  Q
    |||||||| || ||||||||||| ||||||||| |||| || ||| ||||||||||| |||||||||||||| | ||||| ||||||||||||| ||  |    
14825487 tttgatcttgtacattctgatatttggggtcctgctcctactccttctatgggaggttctcggtattttgttttatttatcgatgattattctcgttata 14825586  T
186 catggatagatatgatnnnnnnntagacacgagcttactcaaatttacatcaattttgccaaaatgattcaaacacaattttctaaagtaattaaagttt 285  Q
    | ||||||   |||||       | | || |||||| ||||||||||||  ||  |||| ||||||||| || ||||||||||||||  ||| || ||||    
14825587 cttggatattcatgatgaaaaa-tcggcatgagcttcctcaaatttacactaacgttgcaaaaatgattaaagcacaattttctaaaacaatcaaggttt 14825685  T
286 tccaacgagataatgccatggaatatcgtgattctaaactcttgtcttttcttagtgagcagggtacattttctgaattttcttgtccatacacatctca 385  Q
    | |  ||||||||||| |||||||| ||||||| ||||||||| ||||||||| || |||||||||| || ||||||||||||||||| || ||||| ||    
14825686 ttcgccgagataatgcaatggaataccgtgattttaaactcttatcttttcttggtaagcagggtaccttgtctgaattttcttgtccttatacatcaca 14825785  T
386 acaaaagggtcgcgctgagagaaagcatcgtcacattcttgactcagtctgtgccatgcttatctcagcttcttgtccataacgtgcttgg 476  Q
    |||||| ||||| ||||||||||||||||||| ||||||||| || ||  ||||||||||||||||||| ||||||||  |||||||||||    
14825786 acaaaatggtcgtgctgagagaaagcatcgtcccattcttgattctgttcgtgccatgcttatctcagcctcttgtcctgaacgtgcttgg 14825876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 503
Target Start/End: Complemental strand, 5241965 - 5241905
Alignment:
443 gcttatctcagcttcttgtccataacgtgcttggggggaagctgctcttactgatgtccat 503  Q
    |||||||||||| ||||||||| |||| |||||||| |||||||||||||| | |||||||    
5241965 gcttatctcagcctcttgtccaaaacgcgcttggggtgaagctgctcttaccgctgtccat 5241905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 128 - 494
Target Start/End: Complemental strand, 20670483 - 20670117
Alignment:
128 cctactatgggaggtgctcggtattttgttctctttattgatgattattctcatttcacatggatagatatgatnnnnnnntagacacgagcttactcaa 227  Q
    ||||| ||||||||| |||||||||||||| | |||||||||||||||||||| || ||||||||| |||||||       ||||||||||||| ||| |    
20670483 cctaccatgggaggttctcggtattttgttatatttattgatgattattctcactttacatggatatatatgatgaaaaa-tagacacgagcttcctcga 20670385  T
228 atttacatcaattttgccaaaatgattcaaacacaattttctaaagtaattaaagttttccaacgagataatgccatggaatatcgtgattctaaactct 327  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||| |  |||||||||| ||||||| ||||||||||||||||||    
20670384 atttatatcaattttgccaaaatgattcaaacacaattttctaaagttgttaaattttttcggcgagataatgtcatggaagatcgtgattctaaactct 20670285  T
328 tgtcttttcttagtgagcagggtacattttctgaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattcttga 427  Q
    ||||||| |||||||| || ||||| || | ||||||||| ||||||||||||||||||||||| ||||| | ||| |||||||||||||||||||||||    
20670284 tgtctttacttagtgaacatggtaccttgtttgaattttcatgtccatacacatctcaacaaaatggtcgtgatgaaagaaagcatcgtcacattcttga 20670185  T
428 ctcagtctgtgccatgcttatctcagcttcttgtccataacgtgcttggggg-gaagctgctcttact 494  Q
    |||| |  ||| |||||||||| |||| ||||||||| |||||||||||||| |||| ||||||||||    
20670184 ctcaattcgtgtcatgcttatcccagcctcttgtccagaacgtgcttgggggtgaagatgctcttact 20670117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 52393043 - 52392977
Alignment:
90 atctagtgcattctgatatctggggtcctactcccacacctactatgggaggtgctcggtattttgt 156  Q
    |||| ||| ||| |||||||||||||||| |||||||||||| || ||||||| || ||||||||||    
52393043 atcttgtgaattttgatatctggggtcctgctcccacacctattaggggaggttcttggtattttgt 52392977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 52392948 - 52392858
Alignment:
217 agcttactcaaatttacatcaattttgccaaaatgattcaaacacaattttctaaagtaattaaagttttccaacgagataatgccatgga 307  Q
    ||||| ||||| |||||| ||| |||| |||||||||||||| ||||||||  ||||  |||||| ||||   | ||||||||||||||||    
52392948 agcttcctcaattttacagcaactttgtcaaaatgattcaaaaacaatttttcaaagccattaaattttttggatgagataatgccatgga 52392858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 148 - 464
Target Start/End: Original strand, 12544153 - 12544466
Alignment:
148 gtattttgttctctttattgatgattattctcatttcacatggatagatatgatnnnnnnntagacacgagcttactcaaatttacatcaattttgccaa 247  Q
    |||||||||||| |||||||||||||||||||  || ||||||||| |||||||       ||||||||||||| ||||||||||||||||||||  |||    
12544153 gtattttgttctatttattgatgattattctcgctttacatggatatatatgatgaaaaa-tagacacgagcttcctcaaatttacatcaattttatcaa 12544251  T
248 aatgattcaaacacaattttctaaagtaattaaagttttccaacgagataatgccatggaatatcgtgattctaaactcttgtcttttcttagtgagcag 347  Q
    ||||| |  |||||||||||  ||||| |||||||| || |  |||||||||||||   ||||||||||||||||||||||||| ||||||| |||||||    
12544252 aatgaattcaacacaatttt--aaagtcattaaagtctttcggcgagataatgccacaaaatatcgtgattctaaactcttgtcatttcttaatgagcag 12544349  T
348 ggtacattttctgaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattcttgactcagtctgtgccatgctta 447  Q
     | || || ||  | ||||| |||||||||||||||||||||||  || | |||||||||||||||||||||||||||||||||||| ||||||||||||    
12544350 aggactttgtcccagttttcatgtccatacacatctcaacaaaatagttgtgctgagagaaagcatcgtcacattcttgactcagtccgtgccatgctta 12544449  T
448 tctcagcttcttgtcca 464  Q
    | ||||| |||||||||    
12544450 tttcagcatcttgtcca 12544466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 239 - 455
Target Start/End: Original strand, 15269032 - 15269249
Alignment:
239 ttttgccaaaatgattcaaacacaattttctaaagtaattaaagttttccaacgagataatgccatggaatatcgtg-at-tctaaactcttgtcttttc 336  Q
    |||||||||||||||||||||  | ||||||||| |  |||||||||| |||||||||||||||||| |||||  || || |||||||||||||||||||    
15269032 ttttgccaaaatgattcaaacttagttttctaaaatctttaaagtttttcaacgagataatgccatgaaatatattgtatatctaaactcttgtcttttc 15269131  T
337 ttagtgagcagggtacattttctgaattttcttgtccatacacatctcaacaaaagggtcgcgctgagagaaagcatcgtcacattcttgactcagtctg 436  Q
    || |||||||| |||| || ||||| | || ||||||||| |||| ||||||||| ||| ||||||||||||||||||||||| ||||||||| ||| ||    
15269132 ttggtgagcagagtaccttgtctgattatt-ttgtccatatacatttcaacaaaatggttgcgctgagagaaagcatcgtcacgttcttgacttagtttg 15269230  T
437 tgccatgcttatctcagct 455  Q
    || ||||||||||||||||    
15269231 tgtcatgcttatctcagct 15269249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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