View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10182_low_5 (Length: 414)
Name: NF10182_low_5
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 90 - 388
Target Start/End: Complemental strand, 48827436 - 48827145
Alignment:
| Q |
90 |
ctcaacccggttatttgcgggacgaaatctatagaattcctctatcttctagcaacatcattacttccatatatatgtatatatgcttctgtgttgtaat |
189 |
Q |
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| T |
48827436 |
ctcaacccggttatttgcgggacgaaatctttagaattcctctatcttcttgcaacatcattacttccatacatat------atgcttctgtgttgtaa- |
48827344 |
T |
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| Q |
190 |
tgtaaagatttttcagttcaaagaagcataatttttaatacttatttccaattatatgtgcttagaaagggcaagtattgtgcgaatttcttaacgaaac |
289 |
Q |
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| T |
48827343 |
-----agatttttcagttcaaagaatcatattttttaacacttatttccaattatatgtgcttagaaagggcaagtattgtgcgaatttcttgacgaaac |
48827249 |
T |
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| Q |
290 |
ttagacactctttaaggccatgtgtgccactttggaaaattcattcactaa----gaagattgtgttaagac-ttgatatcccaggtcgaaccatgttca |
384 |
Q |
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| T |
48827248 |
ttagacactctttaaggccatgtgtgacactttggaaaattcattcactaaagttgaagattgtgtcaagactttgatgttccaggtcgaaccatgttca |
48827149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 48827545 - 48827490
Alignment:
| Q |
29 |
tatatatgtccacagacaaataatattaaaaaacatcaatttgaattcaaatatat |
84 |
Q |
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| T |
48827545 |
tatatatgttcacagacaaataatattaaaaaacatcaatttgaattcaaatatat |
48827490 |
T |
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