View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10182_low_8 (Length: 370)
Name: NF10182_low_8
Description: NF10182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10182_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 70 - 363
Target Start/End: Complemental strand, 18252159 - 18251866
Alignment:
| Q |
70 |
aatggaggcttagatggttacattgtctttttcacaacaaatactaaattaagacatgttattggaaaagtatctaaataaagattctactttgtatact |
169 |
Q |
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| T |
18252159 |
aatgaaggcttagatggttacattgtctttttcacaacaaatactaaattgagacatgttattggaaaagtatctaaataaagattctactttgtatgct |
18252060 |
T |
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| Q |
170 |
atatagtttgtagctagtgtttaccctccccttctcactaggaaatgacaccggtgatttggagtttggtcggaaagcaaattcagtttctcttgaacaa |
269 |
Q |
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| T |
18252059 |
atatagtttgtagctagtgtttaccctctccttctcactagaaaatgacaccggtgatttggagtttggtcagaaagcaaactcagtttctcttgaacaa |
18251960 |
T |
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| Q |
270 |
tttctcctcgatgctcattaaccatttgtatctaattgcttggttattttatatatccatgtcttttctctaccactcttgttatttcttctca |
363 |
Q |
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| T |
18251959 |
tttctcctcgatacttattaaccacttgtatctaattgtttggttattttatatatccacgtcttttctctaccactcttgttatttcttctca |
18251866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 18257049 - 18257105
Alignment:
| Q |
5 |
agtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattctaacaaatgc |
61 |
Q |
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| T |
18257049 |
agtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattctaacaaatgc |
18257105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 18252523 - 18252468
Alignment:
| Q |
6 |
gtcattgacaaatgcatgtaatgagtaatgatgatcgtggtcattctaacaaatgc |
61 |
Q |
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| T |
18252523 |
gtcattgacaaatgcatgtaatgagtaatgatgattgtggtcattctaacaaatgc |
18252468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 31221611 - 31221543
Alignment:
| Q |
79 |
ttagatggttacattgtctttttcacaac-aaatactaaattaagacatgttattggaaaagtatctaa |
146 |
Q |
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| T |
31221611 |
ttagatggttagattgtctttttcagaacaaaatactagaatgagacatgctattggaaaagtatctaa |
31221543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 31246188 - 31246112
Alignment:
| Q |
79 |
ttagatggttacattgtctttttcacaacaaa-tactaaattaagacatgttattggaaaagtatctaaataaagat |
154 |
Q |
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| T |
31246188 |
ttaggtggctacattgtcttttacgtaacaaaatactaaattgagatatgttactgcaaaagcatctaaataaagat |
31246112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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