View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10183_high_2 (Length: 293)

Name: NF10183_high_2
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10183_high_2
NF10183_high_2
[»] chr6 (7 HSPs)
chr6 (14-119)||(11101776-11101881)
chr6 (225-278)||(11101890-11101943)
chr6 (209-274)||(19418569-19418634)
chr6 (208-271)||(22297654-22297717)
chr6 (208-274)||(17900819-17900885)
chr6 (209-274)||(26608980-26609045)
chr6 (208-272)||(10252939-10253003)
[»] chr8 (5 HSPs)
chr8 (208-274)||(22266295-22266361)
chr8 (228-274)||(38388516-38388562)
chr8 (226-274)||(1551486-1551534)
chr8 (232-274)||(24757122-24757164)
chr8 (229-275)||(1988774-1988820)
[»] chr3 (5 HSPs)
chr3 (226-274)||(32961172-32961220)
chr3 (220-274)||(26835771-26835825)
chr3 (229-274)||(29458028-29458073)
chr3 (229-274)||(20585799-20585844)
chr3 (231-272)||(49452682-49452723)
[»] chr4 (8 HSPs)
chr4 (208-272)||(50086708-50086772)
chr4 (232-272)||(16072339-16072379)
chr4 (232-274)||(40161108-40161150)
chr4 (208-274)||(49649962-49650028)
chr4 (232-271)||(14815441-14815480)
chr4 (209-274)||(6480744-6480810)
chr4 (228-274)||(41377194-41377240)
chr4 (224-272)||(21416126-21416174)
[»] chr2 (4 HSPs)
chr2 (229-274)||(16498181-16498226)
chr2 (225-274)||(35501390-35501439)
chr2 (209-274)||(19994992-19995057)
chr2 (228-274)||(36622096-36622142)
[»] chr7 (6 HSPs)
chr7 (208-270)||(19777892-19777953)
chr7 (228-274)||(48984368-48984414)
chr7 (229-274)||(26203093-26203138)
chr7 (242-274)||(1703948-1703980)
chr7 (229-277)||(7833815-7833863)
chr7 (233-274)||(11736240-11736281)
[»] chr1 (2 HSPs)
chr1 (208-274)||(52112324-52112390)
chr1 (230-274)||(5178730-5178774)
[»] chr5 (4 HSPs)
chr5 (227-272)||(19129714-19129759)
chr5 (208-271)||(35556856-35556920)
chr5 (208-275)||(7609613-7609679)
chr5 (224-274)||(28812279-28812329)
[»] scaffold0005 (1 HSPs)
scaffold0005 (232-271)||(24231-24270)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 11101776 - 11101881
Alignment:
Q  14 gatgaaacggtatggttgatgcctggcaattgcatactgtttttctccaaagcacgttaaagtgaggaccatccctaaaagttgttctcataggacaaga 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11101776 gatgaaacggtatggttgatgcctggcaattgcatactgtttttctccaaagcacgttaaagtgaggaccatccctaaaagttgttctcataggacaaga 11101875  T
Q  114 gtttta 119  Q
    ||||||    
T  11101876 gtttta 11101881  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 225 - 278
Target Start/End: Original strand, 11101890 - 11101943
Alignment:
Q  225 tccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagtagtt 278  Q
    ||||| |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  11101890 tccggagcattggttaagcaactaaaagaggtaagattttattaaaaagtagtt 11101943  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 274
Target Start/End: Original strand, 19418569 - 19418634
Alignment:
Q  209 aatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||||||||||||| ||||| |||| ||||||| | |||||| ||||||||||||||||||||    
T  19418569 aatgttaactagtgttttcggggtattggttaagcatccaaaagaagtaagattttattaaaaagt 19418634  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 22297717 - 22297654
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaa 271  Q
    |||||||||| ||||  || ||||||||| |||||||||||||||| |||| ||||||||||||    
T  22297717 gaatgttaaccagtgcctctggggcattggttaagcagctaaaagaagtaaaattttattaaaa 22297654  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 17900885 - 17900819
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||||| ||||   ||| || |||| |||||||| ||||||||||||||||||||||||||||    
T  17900885 gaatgttaaccagtgcccccgaggtattggttaagcagttaaaagaggtaagattttattaaaaagt 17900819  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 26609045 - 26608980
Alignment:
Q  209 aatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||||  ||| |||| | |||||| |||||||| |||||||| |||||||||||||||||||    
T  26609045 aatgttaacatgtgcttccagagcattggttaagcagttaaaagagataagattttattaaaaagt 26608980  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 272
Target Start/End: Original strand, 10252939 - 10253003
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaa 272  Q
    ||||||||||  |||| |||| || |||| ||||||| | |||||| ||||||||||||||||||    
T  10252939 gaatgttaaccggtgtctccgaggtattggttaagcaaccaaaagaagtaagattttattaaaaa 10253003  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 22266361 - 22266295
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||||| ||||   |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22266361 gaatgttaaccagtgcccccggggcattgcttaagcagttaaaagaggtaagattttattaaaaagt 22266295  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 38388516 - 38388562
Alignment:
Q  228 ggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||    
T  38388516 ggggcatcggttaagcagctaaaagaggtaagattttattaaaaagt 38388562  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 1551486 - 1551534
Alignment:
Q  226 ccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||||||| ||||||||  |||||||||||||||||||||||||||    
T  1551486 ccggggcattgattaagcagtcaaaagaggtaagattttattaaaaagt 1551534  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 24757164 - 24757122
Alignment:
Q  232 cattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  24757164 cattggttaagcagctaaaagagataagattttattaaaaagt 24757122  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 1988774 - 1988820
Alignment:
Q  229 gggcattgcttaagcagctaaaagaggtaagattttattaaaaagta 275  Q
    |||||||| ||||| || |||||||||||||| ||||||||||||||    
T  1988774 gggcattgattaaggagttaaaagaggtaagaatttattaaaaagta 1988820  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 32961172 - 32961220
Alignment:
Q  226 ccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32961172 ccggggcattggttaagcagctaaaagaggtaagattttattaaaaagt 32961220  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 274
Target Start/End: Complemental strand, 26835825 - 26835771
Alignment:
Q  220 gtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||| |||| |||||| ||||||||||||||||| ||| |||||||||||||||    
T  26835825 gtgttcccggcgcattggttaagcagctaaaagagttaaaattttattaaaaagt 26835771  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 29458028 - 29458073
Alignment:
Q  229 gggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  29458028 gggcattgattaagcagctaaaagagataatattttattaaaaagt 29458073  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 20585799 - 20585844
Alignment:
Q  229 gggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||  ||||| | |||||||||||||||||||||||||||||    
T  20585799 gggcattcgttaagtaactaaaagaggtaagattttattaaaaagt 20585844  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 49452723 - 49452682
Alignment:
Q  231 gcattgcttaagcagctaaaagaggtaagattttattaaaaa 272  Q
    |||||| |||||||| |||||||||||||| |||||||||||    
T  49452723 gcattggttaagcagttaaaagaggtaagaatttattaaaaa 49452682  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 50086772 - 50086708
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaa 272  Q
    |||||||||| ||||   ||||||||||| |||||||||||||||||| ||||||||||||||||    
T  50086772 gaatgttaaccagtgcccccggggcattggttaagcagctaaaagaggcaagattttattaaaaa 50086708  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 16072339 - 16072379
Alignment:
Q  232 cattgcttaagcagctaaaagaggtaagattttattaaaaa 272  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  16072339 cattggttaagcagctaaaagaggtaagattttattaaaaa 16072379  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 274
Target Start/End: Complemental strand, 40161150 - 40161108
Alignment:
Q  232 cattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||| |||||||| ||||||||||||||||||||||||||||    
T  40161150 cattgattaagcaggtaaaagaggtaagattttattaaaaagt 40161108  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Complemental strand, 49650028 - 49649962
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||||||||||||||||  || |||| |||||||  |||||||| ||| |||||||||||||||    
T  49650028 gaatgttaactagtgtttccaaggtattggttaagcaattaaaagagataatattttattaaaaagt 49649962  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 14815480 - 14815441
Alignment:
Q  232 cattgcttaagcagctaaaagaggtaagattttattaaaa 271  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  14815480 cattggttaagcagctaaaagaagtaagattttattaaaa 14815441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 6480810 - 6480744
Alignment:
Q  209 aatgttaactagtgtttccggggcattgcttaagcagctaaaa-gaggtaagattttattaaaaagt 274  Q
    ||||||||| | |||| |||| | |||| |||||||||||||| |||||||||||| ||||||||||    
T  6480810 aatgttaaccaatgttcccggagtattggttaagcagctaaaaagaggtaagatttaattaaaaagt 6480744  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 41377194 - 41377240
Alignment:
Q  228 ggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||||| ||||| || |||||||||||| |||||||||||||||    
T  41377194 ggggcattggttaagtagttaaaagaggtaaaattttattaaaaagt 41377240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 21416126 - 21416174
Alignment:
Q  224 ttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaa 272  Q
    |||||| | |||| |||||||  ||||||||||||||||||||||||||    
T  21416126 ttccggagaattggttaagcatttaaaagaggtaagattttattaaaaa 21416174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 16498226 - 16498181
Alignment:
Q  229 gggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||    
T  16498226 gggcattggttaagcagttaaaagaggtaagattttattaaaaagt 16498181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Original strand, 35501390 - 35501439
Alignment:
Q  225 tccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  35501390 tccggggcattggttaagcaggtaaaagaagtaagattttattaaaaagt 35501439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 19995057 - 19994992
Alignment:
Q  209 aatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||||  ||||| ||||||||| | |||||||| |||||||||||||  |||||||||||||    
T  19995057 aatgttaaccggtgttcccggggcatcggttaagcagttaaaagaggtaagcatttattaaaaagt 19994992  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 36622096 - 36622142
Alignment:
Q  228 ggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||| |||| ||||| | |||||||||||||||||||||||||||||    
T  36622096 ggggtattggttaagtaactaaaagaggtaagattttattaaaaagt 36622142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 19777892 - 19777953
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaa 270  Q
    |||||||||| |||| | || ||| |||| |||||||||||||||||||||||||||||||||    
T  19777892 gaatgttaaccagtgct-ccagggtattgattaagcagctaaaagaggtaagattttattaaa 19777953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 274
Target Start/End: Original strand, 48984368 - 48984414
Alignment:
Q  228 ggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||||    
T  48984368 ggggaattggttaagcagttaaaagaggtaagattttattaaaaagt 48984414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 26203138 - 26203093
Alignment:
Q  229 gggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||| ||||||| ||||||||||||| |||||||||||||||    
T  26203138 gggcattggttaagcaactaaaagaggtaaaattttattaaaaagt 26203093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 274
Target Start/End: Complemental strand, 1703980 - 1703948
Alignment:
Q  242 gcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||||||||||||||||||||||||||||    
T  1703980 gcagctaaaagaggtaagattttattaaaaagt 1703948  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 7833863 - 7833815
Alignment:
Q  229 gggcattgcttaagcagctaaaagaggtaagattttattaaaaagtagt 277  Q
    |||||||| ||||||||| |||| | |||||||||||||||||||||||    
T  7833863 gggcattggttaagcagccaaaacaagtaagattttattaaaaagtagt 7833815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 274
Target Start/End: Complemental strand, 11736281 - 11736240
Alignment:
Q  233 attgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||| ||||||||| |||||| ||||||||||||||||||||    
T  11736281 attggttaagcagccaaaagaagtaagattttattaaaaagt 11736240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 52112324 - 52112390
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    |||||||||| ||||   |||| |||||| |||||||||||||||||  ||||||||||||||||||    
T  52112324 gaatgttaacaagtgcccccggagcattggttaagcagctaaaagagaaaagattttattaaaaagt 52112390  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 5178730 - 5178774
Alignment:
Q  230 ggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||| |||||||||||||| |||||| |||||||||||||||    
T  5178730 ggcattggttaagcagctaaaataggtaaaattttattaaaaagt 5178774  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 19129714 - 19129759
Alignment:
Q  227 cggggcattgcttaagcagctaaaagaggtaagattttattaaaaa 272  Q
    |||||||||  |||||||| ||||||||||||||||||||||||||    
T  19129714 cggggcattcgttaagcagataaaagaggtaagattttattaaaaa 19129759  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 35556856 - 35556920
Alignment:
Q  208 gaatgttaactagtgtttcc-ggggcattgcttaagcagctaaaagaggtaagattttattaaaa 271  Q
    |||||||||||| ||  ||| ||||||||| ||||||| ||||||||||||||| ||||||||||    
T  35556856 gaatgttaactaatgcctcctggggcattggttaagcaactaaaagaggtaagaatttattaaaa 35556920  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 275
Target Start/End: Complemental strand, 7609679 - 7609613
Alignment:
Q  208 gaatgttaactagtgtttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagta 275  Q
    |||||||||| |||| | ||||||||||| ||||||| | |||||| ||||| |||||||||||||||    
T  7609679 gaatgttaaccagtgctcccggggcattggttaagca-ccaaaagaagtaagtttttattaaaaagta 7609613  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 274
Target Start/End: Original strand, 28812279 - 28812329
Alignment:
Q  224 ttccggggcattgcttaagcagctaaaagaggtaagattttattaaaaagt 274  Q
    ||||||||||||| |||| |||  ||||||||||||| |||||||||||||    
T  28812279 ttccggggcattgattaaccagtcaaaagaggtaagagtttattaaaaagt 28812329  T

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Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 24231 - 24270
Alignment:
Q  232 cattgcttaagcagctaaaagaggtaagattttattaaaa 271  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  24231 cattggttaagcagctaaaagaagtaagattttattaaaa 24270  T

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