View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_high_4 (Length: 250)
Name: NF10183_high_4
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 31996101 - 31996343
Alignment:
| Q |
7 |
gagagatgaacaagtacatgcagacaatgcaagaatgaactttcacactggagatgtcggtgaccacattgcgcatctaaaggtcttcaatacatggaaa |
106 |
Q |
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| T |
31996101 |
gagagataaacaagtacatgcagacaatgcaagaatgaactttcacactggagatgtcggtgaccacattgcgcatctaaaggtcttcaattcatggaaa |
31996200 |
T |
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| Q |
107 |
gaggccaattattcaacacaatggtgttttgagaattatgtgcaggtcagaagtatgaaacgtgctagggatatccgtgatcaactggcaggtctattgg |
206 |
Q |
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| T |
31996201 |
gaggccaattattcaacgcaatggtgttttgagaattatgtgcaggtcagaagtatgaaacgtgctagggatatccgtgatcaactggcaggtctattgg |
31996300 |
T |
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| Q |
207 |
aaagggttgaaatcgaactaatttccaatcccaataatttaga |
249 |
Q |
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| T |
31996301 |
aaagggttgagatcgaactaacttccaatcccaataatttaga |
31996343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 15842565 - 15842798
Alignment:
| Q |
15 |
aacaagtacatgcagacaatgcaagaatgaactttcacactggagatgtcggtgaccacattgcgcatctaaaggtcttcaatacatggaaagaggccaa |
114 |
Q |
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| T |
15842565 |
aacaagtacatgcagacaatgcaagaatgaattttcacactggagatgttggtgaccacattgctcatctaaaggtctacagtacatggaaacaggccaa |
15842664 |
T |
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| Q |
115 |
ttattcaacacaatggtgttttgagaattatgtgcaggtcagaagtatgaaacgtgctagggatatccgtgatcaactggcaggtctattggaaagggtt |
214 |
Q |
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| T |
15842665 |
ttattcaacacgatggtgttatgagaattatatacaggtaaggagtatgaaacgtgctagggatatccgtgatcaacttttaggtctattagataaggtt |
15842764 |
T |
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| Q |
215 |
gaaatcgaactaatttccaatcccaataatttag |
248 |
Q |
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| T |
15842765 |
gacatcgaactaatttcaaattccaatgatttag |
15842798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 249
Target Start/End: Original strand, 24010567 - 24010796
Alignment:
| Q |
20 |
gtacatgcagacaatgcaagaatgaactttcacactggagatgtcggtgaccacattgcgcatctaaaggtcttcaatacatggaaagaggccaattatt |
119 |
Q |
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| T |
24010567 |
gtacatgcagacaatgcaagaatgaattttcacactggaaatgttggtgaccacattgctcatctaaatgtctacaattcatggaaggagtccaattatt |
24010666 |
T |
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| Q |
120 |
caacacaatggtgttttgagaattatgtgcaggtcagaagtatgaaacgtgctagggatatccgtgatcaactggcaggtctattggaaagggttgaaat |
219 |
Q |
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| T |
24010667 |
caagacaatggtgttatgagaattatatacaggtaaggagtatgaaacgtgctaaggatatccgtgatcaacttgtaggtctcttggagaggattgagat |
24010766 |
T |
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| Q |
220 |
cgaactaatttccaatcccaataatttaga |
249 |
Q |
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| T |
24010767 |
tgaactaacttcgaattctaatgatttaga |
24010796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 7289623 - 7289678
Alignment:
| Q |
161 |
atgaaacgtgctagggatatccgtgatcaactggcaggtctattggaaagggttga |
216 |
Q |
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| T |
7289623 |
atgaaacgggcgagggatatccgtgatcaacttgcaggtctattagagagggttga |
7289678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 145
Target Start/End: Original strand, 7288948 - 7289006
Alignment:
| Q |
87 |
aggtcttcaatacatggaaagaggccaattattcaacacaatggtgttttgagaattat |
145 |
Q |
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| T |
7288948 |
aggtctacaattcttggaaggagaccaattattcaacacaatggtgttatgaaaattat |
7289006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 7288349 - 7288406
Alignment:
| Q |
15 |
aacaagtacatgcagacaatgcaagaatgaactttcacactggagatgtcggtgacca |
72 |
Q |
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| T |
7288349 |
aacaagtgcatgcagacaatgcaaggctgaattttcacactggaaatgttggagacca |
7288406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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