View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_high_8 (Length: 244)
Name: NF10183_high_8
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 224
Target Start/End: Original strand, 52739635 - 52739850
Alignment:
| Q |
8 |
taaagtcaatctcaaaagcaaaataggagatcaagtttgcatcaaatatgaattctattttcaatgactaaggcataaggctctcaacaagatgatcatc |
107 |
Q |
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| T |
52739635 |
taaagtcaatctcaaaagcaaaataggagatcaagtttgcatcaaatatgaattctattttcaatgactaaggcataaggctctcaacaagatgatcatc |
52739734 |
T |
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| Q |
108 |
tggtgtaatcattagcagcaaacactttaaaactacaacaggaaagttcaatatgtttgtcccttctgataagtacagaatcaagcttctgcacaaaaat |
207 |
Q |
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| T |
52739735 |
tggtgtaattattagcagcaaacactttaaaactacaacaggaaagttcaatatgtttgtcccttctgataagtacagaatcaagcttctgcac-aaaat |
52739833 |
T |
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| Q |
208 |
tagttcaacctttccca |
224 |
Q |
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||||||||||||||||| |
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| T |
52739834 |
tagttcaacctttccca |
52739850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 44396564 - 44396524
Alignment:
| Q |
134 |
ttaaaactacaacaggaaagttcaatatgtttgtcccttct |
174 |
Q |
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|||||||||||| | ||||||||||||||||||||| |||| |
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| T |
44396564 |
ttaaaactacaataagaaagttcaatatgtttgtccattct |
44396524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 31667168 - 31667252
Alignment:
| Q |
118 |
attagcagcaaacactttaaaactacaacaggaaagttcaatatgtttgtcccttctgataagtacagaatcaagcttctgcaca |
202 |
Q |
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|||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||||||| |||| |
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| T |
31667168 |
attagcggcaagcactttaaaactacaccaggaaagttcaatatgcctgtcccttctgataagtgcaggatcaagcttctacaca |
31667252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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