View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_high_9 (Length: 205)
Name: NF10183_high_9
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 31996706 - 31996536
Alignment:
| Q |
19 |
ttacagaaccagaaagaacaaccaatatttctcaaataatgtgccagctacatgtcctacagtgcaagtccacatccacgaggcaatttcttggaactcg |
118 |
Q |
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| T |
31996706 |
ttacagaaccagaaagaacaaccaatatttctcaaataatgtgccagctacatgtcctacagtgcaagtccacatccacgaggcattttcttggaactcg |
31996607 |
T |
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| Q |
119 |
agtctccaacatccttgggatcgtaacagtggggggctatctccagcaaccactctggctttatctctgtg |
189 |
Q |
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| T |
31996606 |
agtctccaacatccttgggatcgtaacagtggggggctatctccagcaaccactctggctttatctctgtg |
31996536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 31997934 - 31997874
Alignment:
| Q |
81 |
tgcaagtccacatccacgaggcaatttcttggaactcgagtctccaacatccttgggatcg |
141 |
Q |
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| T |
31997934 |
tgcaagtccacgtccacgaggcattttcttggaactcgagtattcgacgtccttgggatcg |
31997874 |
T |
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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 81 - 189
Target Start/End: Complemental strand, 24011097 - 24010989
Alignment:
| Q |
81 |
tgcaagtccacatccacgaggcaatttcttggaactcgagtctccaacatccttgggatcgtaacagtggggggctatctccagcaaccactctggcttt |
180 |
Q |
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| T |
24011097 |
tgcaagtccacttccacggggcattttcttggaactcaagtcttcaacatccttaggattgtaaaaattgggggctatctccagcaaccactctggcttt |
24010998 |
T |
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| Q |
181 |
atctctgtg |
189 |
Q |
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| T |
24010997 |
atctctgtg |
24010989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 189
Target Start/End: Complemental strand, 7290762 - 7290693
Alignment:
| Q |
120 |
gtctccaacatccttgggatcgtaacagtggggggctatctccagcaaccactctggctttatctctgtg |
189 |
Q |
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| T |
7290762 |
gtcttcaacatccttgagctggtaatagtgaggggctatctccaacaaccactctgcctttaactctgtg |
7290693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 15843058 - 15843016
Alignment:
| Q |
81 |
tgcaagtccacatccacgaggcaatttcttggaactcgagtct |
123 |
Q |
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| T |
15843058 |
tgcaagtccacatccacgaggtattttcttcgaactcgagtct |
15843016 |
T |
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