View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_low_1 (Length: 435)
Name: NF10183_low_1
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 5 - 328
Target Start/End: Complemental strand, 52739634 - 52739311
Alignment:
| Q |
5 |
attcatggataaagaaaggagaatcctcttataatacttctgatccttatctctaataatgcatgaactttattcttagatatgttgttttaactctact |
104 |
Q |
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| T |
52739634 |
attcatggataaagaaaggagaaacctcttataatacttctgatccttatctctaataatgcatgaactttattcttagatatgttgttttaactctact |
52739535 |
T |
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| Q |
105 |
tataattgaagcttggtgttcagccagccttttgcatgttttagctgatgcttatttctaatccttcactaactttgcaaattcttgtgatttggtttgt |
204 |
Q |
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| T |
52739534 |
tataatggaagcttggtgttcagccagccttttgcatgttttcgctgatgcttatttctaatccttcactaactttgcaaatgcttgtgatttggtttgt |
52739435 |
T |
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| Q |
205 |
taactcaattcataatgttatgattttacctatcaagcattcttaaagatttcctaacatataaaatggataacaatctagcatatagttgttttgcaga |
304 |
Q |
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| T |
52739434 |
taactcaactcataatgttatgattttacctatcaagcattcttaaagatttcctaacatataaaatggataacaatctagcatatagttgttttgcaga |
52739335 |
T |
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| Q |
305 |
ttaaatgatgacaatttttaattt |
328 |
Q |
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|||||| ||||||||||||||||| |
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| T |
52739334 |
ttaaattatgacaatttttaattt |
52739311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 188 - 413
Target Start/End: Complemental strand, 45392742 - 45392534
Alignment:
| Q |
188 |
cttgtgatttggtttgttaactcaattcataatgttatgattttacctatcaagcattcttaaagatttcctaacatataaaatggataacaatctagca |
287 |
Q |
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| T |
45392742 |
cttgtgatttgatttgttaactcaactcataatgttatgattttacatatcaagcattattaaagatttcctattatataaaatggataacaatctagca |
45392643 |
T |
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| Q |
288 |
tatagttgttttgcagattaaatgatgacaatttttaatttctgttagcctcttggtattagaagttttgttagtaatgataagatacatattgatcttt |
387 |
Q |
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||||||| |||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||||| |
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| T |
45392642 |
tatagttttttttcagatta----------------aatttctgttagcctctttgtattagaggttttgttagtaatggtatgatacatattgatctta |
45392559 |
T |
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| Q |
388 |
gttgtccgtctttcggcacattaatt |
413 |
Q |
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| T |
45392558 |
gttgtctgtctgtc-gcacattaatt |
45392534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 45393002 - 45392888
Alignment:
| Q |
53 |
atctctaataatgcatgaactttattcttagatatgttgtttta-------actcta--cttataattgaagcttggtgttcagccagcc-ttttgcatg |
142 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||| |||||| || | ||| |||||||| ||||||||||||| ||||||||| |
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| T |
45393002 |
atctctaataatgcatgaacttcattcatagatatgttgttttaagttttgactctactctaaaaatggaagcttgatgttcagccagcctttttgcatg |
45392903 |
T |
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| Q |
143 |
ttttagctgatgctt |
157 |
Q |
| |
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|||||||||| |||| |
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| T |
45392902 |
ttttagctgaagctt |
45392888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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