View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_low_10 (Length: 246)
Name: NF10183_low_10
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 1504799 - 1504579
Alignment:
| Q |
11 |
caaaggttaggaactatcactacttaggaactgtttcttagatgataaannnnnnnctagtcatgattacaaatatgttgatttttgttaatattatttc |
110 |
Q |
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| T |
1504799 |
caaaagttaggaactatcactacttaggaactgtttcttagatgataaatttttttctagtcatgattacaaatatgttgatttttgttaatattatttc |
1504700 |
T |
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| Q |
111 |
aatatcaaatgttagcaattaattgttagatgaatatttactcggttattcagattttaacctataattttctactctccttaacccttaactcaatgga |
210 |
Q |
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| T |
1504699 |
aatgtcaaatgttagcaattaattattagatgaatatttactcggttattcagattttaacctataatcttctactctccttaacccttaactcaatgga |
1504600 |
T |
|
| Q |
211 |
ttaatgatttgcattggttgt |
231 |
Q |
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||||||||||||||||||||| |
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| T |
1504599 |
ttaatgatttgcattggttgt |
1504579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 2477314 - 2477278
Alignment:
| Q |
116 |
caaatgttagcaattaattgttagatgaatatttact |
152 |
Q |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
2477314 |
caaatgttagtaattaattgttagattaatatttact |
2477278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 7879053 - 7879090
Alignment:
| Q |
116 |
caaatgttagcaattaattgttagatgaatatttactc |
153 |
Q |
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| T |
7879053 |
caaatgttagcaattagttgttagattaatatttactc |
7879090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 27112408 - 27112444
Alignment:
| Q |
116 |
caaatgttagcaattaattgttagatgaatatttact |
152 |
Q |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
27112408 |
caaatgttagtaattaattgttagattaatatttact |
27112444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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