View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_low_13 (Length: 240)
Name: NF10183_low_13
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_low_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 45303025 - 45303247
Alignment:
| Q |
18 |
atactatgtatcaaaatcaaacccctcacatcaaattccttataaactcttcatttaattcctcctttcctattcttcatatatcaggagcaacatgtgt |
117 |
Q |
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| T |
45303025 |
atactatgtatcaaaatcaaacccctcacatcaaattccttataaactcttcatttaagtcctcctttcctattcttcatatatcaggagcaacatgtgt |
45303124 |
T |
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| Q |
118 |
atacataaacatcaagttacttaaataaggcctataaacaccaaccctttagaatattattatttaaatacttgaaccaacatagtccaaatgcatttta |
217 |
Q |
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| T |
45303125 |
atacataagcatcaagttacttaaataaggcctataaacaccaaccctttagaatattattatttaaatacttgaaccaacatagtccaaatgcatttta |
45303224 |
T |
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| Q |
218 |
aggaaaatacttgattcaaattc |
240 |
Q |
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| T |
45303225 |
aggaaaatacttgattcaaattc |
45303247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 240
Target Start/End: Original strand, 45149889 - 45150038
Alignment:
| Q |
98 |
atatcaggagcaacatgtgtatacataaacatcaagttacttaaataaggcctataaacaccaaccctttagaatattattatttaaa---tacttg--- |
191 |
Q |
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| T |
45149889 |
atattaggagcaacatgtgtatgcataaacatcaagttacttaagtaaggcctataaacactaaacttttatatttaaattatgtataatgtatttgatt |
45149988 |
T |
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| Q |
192 |
-aaccaacatagtccaaatgcattttaaggaaaatacttgattcaaattc |
240 |
Q |
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| T |
45149989 |
caaccaagatagtccaaatgcattttaaggaaaatacctcattcaaattc |
45150038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 24136561 - 24136509
Alignment:
| Q |
98 |
atatcaggagcaacatgtgtatacataaacatcaagttacttaaataaggcct |
150 |
Q |
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| T |
24136561 |
atatcaggagcatcatgtgtttacataaacatcaagttacttaagtaaggcct |
24136509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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