View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10183_low_14 (Length: 239)

Name: NF10183_low_14
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10183_low_14
NF10183_low_14
[»] chr2 (3 HSPs)
chr2 (1-239)||(2803222-2803460)
chr2 (2-67)||(33561508-33561573)
chr2 (7-92)||(13766795-13766882)
[»] chr4 (1 HSPs)
chr4 (14-92)||(42480533-42480611)
[»] chr6 (3 HSPs)
chr6 (2-67)||(8481962-8482027)
chr6 (1-67)||(5034877-5034943)
chr6 (26-67)||(27226675-27226716)
[»] chr5 (1 HSPs)
chr5 (14-97)||(10351242-10351325)
[»] chr3 (2 HSPs)
chr3 (26-67)||(260805-260846)
chr3 (15-92)||(32930698-32930775)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2803222 - 2803460
Alignment:
Q  1 tttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaacctacaatt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2803222 tttacccaaaacgttaagacattaagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaacaatgtgagacttttaacctacaatt 2803321  T
Q  101 gttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaaaacatgtccaatatgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2803322 gttgccgttggtgttggtatcacattttttcattgccttaggtaagaaacaaagtatatttaagggttatttcttatttgaaaaacatgtccaatatgaa 2803421  T
Q  201 tatcaacactattgtaagtaaccgagtgggggtggtcct 239  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  2803422 tatcaacactatagtaagtaaccgagtgggggtggtcct 2803460  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 33561508 - 33561573
Alignment:
Q  2 ttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 67  Q
    ||||||||||| |||||||| |||||||||||||| ||||  ||||| | |||| |||||||||||    
T  33561508 ttacccaaaaccttaagacaatgagtttatgggtcctctcacttataaagtgtttaacctccactt 33561573  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 13766882 - 13766795
Alignment:
Q  7 caaaacgttaagacattgagtttatgggtcatctc--ttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 92  Q
    |||||| ||||| ||||||||||||  ||||||||  ||||||| |||  ||||||||||||| | |||| ||||| |||||| ||||    
T  13766882 caaaaccttaagtcattgagtttattagtcatctcacttttataaaataatcaacctccacttttctaaacaatgttagacttctaac 13766795  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 42480611 - 42480533
Alignment:
Q  14 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 92  Q
    ||||||||| |||||||||| |||||||  ||| | | |||||||||||||||| || ||||| | |||||||||||||    
T  42480611 ttaagacatcgagtttatggatcatctcacttacatattgttcaacctccactttttcaaatagtatgagacttttaac 42480533  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 8482027 - 8481962
Alignment:
Q  2 ttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 67  Q
    ||||||||||  ||||| || |||||||||| |||||||| |||||| | ||||||||||||||||    
T  8482027 ttacccaaaatcttaaggcaatgagtttatgagtcatctcatttataaagtgttcaacctccactt 8481962  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 5034877 - 5034943
Alignment:
Q  1 tttacccaaaacgttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccactt 67  Q
    |||| ||||||| |||| |||||||||| ||||||||||||  ||||| | || |||||||||||||    
T  5034877 tttatccaaaaccttaaaacattgagttgatgggtcatctcacttataaagtggtcaacctccactt 5034943  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 27226675 - 27226716
Alignment:
Q  26 gtttatgggtcatctcttttatagaatgttcaacctccactt 67  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  27226675 gtttatgggtcatctcatttataaaatgatcaacctccactt 27226716  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 97
Target Start/End: Original strand, 10351242 - 10351325
Alignment:
Q  14 ttaagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaacctaca 97  Q
    |||||||| |||||||||||||||| ||   |||| |||||||||||||| ||| ||||   |||||||||||| |||| ||||    
T  10351242 ttaagacaatgagtttatgggtcatttcacgtataaaatgttcaacctccgcttttttagccaatgtgagacttctaacttaca 10351325  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 260805 - 260846
Alignment:
Q  26 gtttatgggtcatctcttttatagaatgttcaacctccactt 67  Q
    |||||||||||||||| |||||| |||| |||||||||||||    
T  260805 gtttatgggtcatctcatttataaaatgatcaacctccactt 260846  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 32930775 - 32930698
Alignment:
Q  15 taagacattgagtttatgggtcatctcttttatagaatgttcaacctccacttctttaaataatgtgagacttttaac 92  Q
    |||||||||||||||||| ||||||||  ||||| |||||||||| || |||| | |||| ||| | |||||| ||||    
T  32930775 taagacattgagtttatgagtcatctcacttataaaatgttcaacttctacttttctaaacaatataagacttctaac 32930698  T

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