View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10183_low_2 (Length: 361)

Name: NF10183_low_2
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10183_low_2
NF10183_low_2
[»] chr3 (24 HSPs)
chr3 (129-286)||(8578714-8578860)
chr3 (9-67)||(5938737-5938795)
chr3 (9-65)||(19441069-19441125)
chr3 (11-66)||(45227277-45227332)
chr3 (9-67)||(19480035-19480093)
chr3 (9-61)||(18111591-18111643)
chr3 (9-67)||(5938804-5938862)
chr3 (9-67)||(5938871-5938929)
chr3 (9-51)||(5939005-5939047)
chr3 (9-67)||(18111524-18111582)
chr3 (9-67)||(19384282-19384340)
chr3 (9-67)||(28034676-28034734)
chr3 (9-51)||(28034743-28034785)
chr3 (9-52)||(29897183-29897226)
chr3 (9-51)||(5835635-5835677)
chr3 (9-67)||(5938938-5938996)
chr3 (66-174)||(8553460-8553561)
chr3 (66-104)||(8584154-8584192)
chr3 (9-67)||(18111457-18111515)
chr3 (9-67)||(19384220-19384278)
chr3 (9-51)||(19441136-19441178)
chr3 (9-51)||(28034809-28034851)
chr3 (286-319)||(8578423-8578456)
chr3 (9-49)||(29897128-29897168)
[»] chr7 (19 HSPs)
chr7 (9-58)||(3078497-3078546)
chr7 (9-67)||(3078555-3078613)
chr7 (9-67)||(3081346-3081403)
chr7 (9-67)||(15695427-15695485)
chr7 (9-67)||(15702407-15702465)
chr7 (1-67)||(21958470-21958536)
chr7 (9-67)||(21958537-21958595)
chr7 (10-67)||(34456446-34456503)
chr7 (9-67)||(4341295-4341353)
chr7 (9-52)||(3078650-3078693)
chr7 (9-52)||(42785902-42785945)
chr7 (9-67)||(42785954-42786011)
chr7 (9-67)||(48478289-48478346)
chr7 (10-52)||(48478356-48478398)
chr7 (9-50)||(4341229-4341270)
chr7 (9-50)||(48477961-48478002)
chr7 (9-50)||(48478027-48478068)
chr7 (9-50)||(48478093-48478134)
chr7 (9-50)||(48478223-48478264)
[»] scaffold0046 (1 HSPs)
scaffold0046 (9-67)||(90494-90552)
[»] chr8 (11 HSPs)
chr8 (17-67)||(3165849-3165899)
chr8 (9-67)||(25336616-25336674)
chr8 (12-67)||(25336552-25336607)
chr8 (9-67)||(3165916-3165973)
chr8 (9-67)||(5557902-5557959)
chr8 (9-67)||(3165982-3166040)
chr8 (9-67)||(5557836-5557893)
chr8 (9-67)||(20810385-20810443)
chr8 (17-66)||(3165783-3165832)
chr8 (9-50)||(5557770-5557811)
chr8 (3-43)||(20810342-20810382)
[»] chr6 (16 HSPs)
chr6 (9-67)||(5249991-5250049)
chr6 (9-67)||(28145162-28145220)
chr6 (9-66)||(26620431-26620488)
chr6 (9-66)||(26726410-26726467)
chr6 (10-67)||(28145230-28145287)
chr6 (9-51)||(6406611-6406653)
chr6 (9-67)||(28145095-28145153)
chr6 (9-51)||(31113150-31113192)
chr6 (9-50)||(34255591-34255632)
chr6 (9-52)||(5249939-5249982)
chr6 (9-52)||(28145296-28145339)
chr6 (6-52)||(33296078-33296124)
chr6 (9-50)||(29934616-29934657)
chr6 (9-50)||(34255525-34255566)
chr6 (9-50)||(34255657-34255698)
chr6 (4-67)||(31113201-31113265)
[»] chr4 (28 HSPs)
chr4 (9-64)||(31663564-31663619)
chr4 (9-67)||(5578236-5578294)
chr4 (6-67)||(6735363-6735425)
chr4 (9-52)||(4852583-4852626)
chr4 (9-52)||(4852652-4852695)
chr4 (9-51)||(13713188-13713230)
chr4 (1-51)||(31663376-31663426)
chr4 (9-67)||(31663427-31663485)
chr4 (10-67)||(1505993-1506050)
chr4 (1-50)||(1506184-1506233)
chr4 (9-67)||(1506125-1506183)
chr4 (9-67)||(5599930-5599987)
chr4 (10-52)||(5599997-5600039)
chr4 (9-51)||(13713121-13713163)
chr4 (9-51)||(13713321-13713363)
chr4 (9-67)||(14190500-14190557)
chr4 (9-51)||(31663308-31663350)
chr4 (9-50)||(1506059-1506100)
chr4 (17-58)||(5578441-5578482)
chr4 (9-50)||(5599798-5599839)
chr4 (9-50)||(5599864-5599905)
chr4 (9-50)||(5909075-5909116)
chr4 (9-46)||(5909141-5909178)
chr4 (22-67)||(6735431-6735476)
chr4 (9-50)||(13702628-13702669)
chr4 (9-50)||(13713255-13713296)
chr4 (4-52)||(13713383-13713431)
chr4 (9-61)||(31663229-31663281)
[»] scaffold0927 (2 HSPs)
scaffold0927 (9-67)||(3576-3634)
scaffold0927 (9-67)||(3643-3701)
[»] scaffold0043 (2 HSPs)
scaffold0043 (9-67)||(69747-69805)
scaffold0043 (10-67)||(69814-69871)
[»] chr2 (12 HSPs)
chr2 (9-67)||(31346814-31346872)
chr2 (9-67)||(31314998-31315056)
chr2 (9-51)||(31315065-31315107)
chr2 (9-51)||(31315135-31315177)
chr2 (12-66)||(31346934-31346988)
chr2 (1-67)||(31347000-31347066)
chr2 (9-67)||(31347067-31347125)
chr2 (1-58)||(31315195-31315252)
chr2 (9-50)||(2743383-2743424)
chr2 (9-50)||(2743449-2743490)
chr2 (9-50)||(2743515-2743556)
chr2 (6-43)||(11951282-11951319)
[»] chr1 (9 HSPs)
chr1 (17-67)||(15088591-15088641)
chr1 (9-67)||(22207980-22208038)
chr1 (17-67)||(22211199-22211249)
chr1 (17-52)||(14114823-14114858)
chr1 (1-52)||(22207700-22207751)
chr1 (17-67)||(22207649-22207699)
chr1 (9-51)||(22207777-22207819)
chr1 (9-67)||(51844364-51844422)
chr1 (12-52)||(14114754-14114794)
[»] scaffold0060 (1 HSPs)
scaffold0060 (4-51)||(39927-39974)
[»] chr5 (5 HSPs)
chr5 (9-52)||(41528655-41528698)
chr5 (9-67)||(41528457-41528514)
chr5 (9-67)||(41528523-41528580)
chr5 (9-67)||(41528589-41528646)
chr5 (9-58)||(37368910-37368959)


Alignment Details
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 129 - 286
Target Start/End: Complemental strand, 8578860 - 8578714
Alignment:
Q  129 ttgtagttgtggtaacttcaaaaacaataatgctgc---attcaagatttaaaacttataagattctactaagtcttgaatagttaaccctccacagtcc 225  Q
    |||||||||||||||||| |||||||||||||||||   ||||||||| |||||||||              |||||||||||| ||| ||||||||| |    
T  8578860 ttgtagttgtggtaacttgaaaaacaataatgctgctgcattcaagatataaaactta--------------gtcttgaatagtcaactctccacagttc 8578775  T
Q  226 acacgacacttatgcataaattcataaactaaaagataatacttccttatggatcctctaa 286  Q
    |||||||||| |||||||||||||||||||||||||||||  || ||||||||||||||||    
T  8578774 acacgacactcatgcataaattcataaactaaaagataatttttgcttatggatcctctaa 8578714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5938737 - 5938795
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  5938737 ctcatagtctacattatctcttcgttgtagcaaactgagttttcgcatttgttactatg 5938795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 19441069 - 19441125
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttacta 65  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||||    
T  19441069 ctcatagactacattatctcttcgtcgtagcaaacggagttttcgcatttgttacta 19441125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 66
Target Start/End: Complemental strand, 45227332 - 45227277
Alignment:
Q  11 catagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 66  Q
    ||||| ||||||||||||||||||||| |||||||||||||| ||||| |||||||    
T  45227332 cataggctacattatctcttcgttgtagcaaacagagtttttacatttcttactat 45227277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 19480093 - 19480035
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||| |||||  ||||| ||||||||||||||||||||||    
T  19480093 ctcataggctacattatctcttcattgtaggaaacaaagtttttgcatttgttactatg 19480035  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 18111591 - 18111643
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgtt 61  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||    
T  18111591 ctcataggctacattatctcttcgttgtagcaaacggagttttcgcatttgtt 18111643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5938804 - 5938862
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||| ||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  5938804 ctcataggctatattatctcttcgttgtagcaaacggagttttcacatttgttactatg 5938862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5938871 - 5938929
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| |||||| |||||||||||||| ||||| |||||||  ||||||||||||||    
T  5938871 ctcataggctacatcatctcttcgttgtagcaaacggagttttcacatttgttactatg 5938929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 5939005 - 5939047
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||||||||||||||||||||||||| ||||| |||||||    
T  5939005 ctcatagactacattatctcttcgttgtagcaaacggagtttt 5939047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 18111524 - 18111582
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  18111524 ctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 18111582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 19384282 - 19384340
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||| ||| ||||| ||||||| ||||| |||||||||    
T  19384282 ctcataggctacattatctcttcgtcgtagcaaacggagttttcgcattcgttactatg 19384340  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 28034676 - 28034734
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||| ||||||||||| |||||| |||||| | |||||||||||||    
T  28034676 ctcataggctacattatttcttcgttgtagcaaacaaagttttcggatttgttactatg 28034734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 28034743 - 28034785
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  28034743 ctcataggctacattatctcttcgttgtagcaaacagagtttt 28034785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 29897183 - 29897226
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||||| |||| ||||||||||||||||| ||||||||||||||    
T  29897183 ctcataaactatattatctcttcgttgtagcaaacagagttttt 29897226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 5835635 - 5835677
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  5835635 ctcataggctacattatctcttcgttgtagcaaacggagtttt 5835677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5938938 - 5938996
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||  ||||| ||||||||    
T  5938938 ctcataggctacattatctcttcgttgtagcaaacggaattttcacatttattactatg 5938996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 8553460 - 8553561
Alignment:
Q  66 tgtgatactatactgcagagtatcaccttgaatgtggctgatatgggctcaatcacagagtttttgtagttgtggtaacttcaaaaacaataatgctgca 165  Q
    |||||||||||||||||||||||||| |  ||||||| |||||  | ||||||        | |||||||||||||||||| |||| |||||||||  ||    
T  8553460 tgtgatactatactgcagagtatcacatcaaatgtggttgatacagactcaatg-------tgttgtagttgtggtaactttaaaaccaataatgccaca 8553552  T
Q  166 ttcaagatt 174  Q
    |||||||||    
T  8553553 ttcaagatt 8553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 8584192 - 8584154
Alignment:
Q  66 tgtgatactatactgcagagtatcaccttgaatgtggct 104  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  8584192 tgtgatactatactgcagagtatcacatggaatgtggct 8584154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 18111457 - 18111515
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| | |||||  ||||||||| ||||    
T  18111457 ctcataggctacattatctcttcgttgtagcaaacggggttttcacatttgttattatg 18111515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 19384220 - 19384278
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||||||  |||||||||||||||| ||| ||||| ||||||| ||||| |||||||||    
T  19384220 ctcataggttacattatctcttcgtcgtagcaaacggagttttcgcattcgttactatg 19384278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 19441136 - 19441178
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||    
T  19441136 ctcataggctacattatctcttcgttgtagcaaacaaagtttt 19441178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 28034809 - 28034851
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  28034809 ctcataggctacattatctcttcgttgtagcaaacggagtttt 28034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 8578456 - 8578423
Alignment:
Q  286 atggatgtccttcaccaagatgagcgagttcaac 319  Q
    ||||||||||||| ||||||||||||||||||||    
T  8578456 atggatgtccttccccaagatgagcgagttcaac 8578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 29897128 - 29897168
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtt 49  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  29897128 ctcataggctacattatctctttgttgtagcaaacagagtt 29897168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 3078546 - 3078497
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcattt 58  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3078546 ctcatagactacattatctcttcgttgtaacaaacaaagtttttgcattt 3078497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 3078613 - 3078555
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||| ||||||||| ||||| ||||||||||||| |||||||||    
T  3078613 ctcataggctacattatctattcgttgtagcaaacggagtttttgcattcgttactatg 3078555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 3081346 - 3081403
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||||||||    
T  3081346 ctcataggctacattatct-ttcgttgtagcaaacggagtttttgcatttgttactatg 3081403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 15695485 - 15695427
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| |||||||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  15695485 ctcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatg 15695427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 15702465 - 15702407
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| |||||||||||||| |||||| ||||| ||||||| |||||||||||||||    
T  15702465 ctcataggctacattatctcttagttgtagcaaacggagttttcgcatttgttactatg 15702407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 21958536 - 21958470
Alignment:
Q  1 agccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||| || | || |||||||||||||||    
T  21958536 agccatacctcataggctacattatctcttcgttgtagcaaacggaatcttcgcatttgttactatg 21958470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 21958595 - 21958537
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||| ||||||||||||||||| ||||| ||||||| |||||||||||||||    
T  21958595 ctcataggctatattatctcttcgttgtagcaaacggagttttcgcatttgttactatg 21958537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 34456503 - 34456446
Alignment:
Q  10 tcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||||||||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  34456503 tcatagactacattatctcttcgttgtagcaaacggagttttcacattttttactatg 34456446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 4341295 - 4341353
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||  |||| |||||||||    
T  4341295 ctcataggctacattatctcttcgttgtagcaaacggagttttcacattcgttactatg 4341353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 3078693 - 3078650
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||    
T  3078693 ctcataggctacattatctcatcgttgtagcaaacagagttttt 3078650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 42785945 - 42785902
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||    
T  42785945 ctcataggctacattatctcttcgttgtagcaaacggagttttt 42785902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 42786011 - 42785954
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  42786011 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 42785954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 48478289 - 48478346
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  48478289 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 48478346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 48478356 - 48478398
Alignment:
Q  10 tcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||    
T  48478356 tcataggctacattatctcttcgttgtagcaaacggagttttt 48478398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 4341229 - 4341270
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  4341229 ctcataggctacattatctcttcgttgtagcaaacggagttt 4341270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 48477961 - 48478002
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  48477961 ctcataggctacattatctcttcgttgtagcaaacggagttt 48478002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 48478027 - 48478068
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  48478027 ctcataggctacattatctcttcgttgtagcaaacggagttt 48478068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 48478093 - 48478134
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  48478093 ctcataggctacattatctcttcgttgtagcaaacggagttt 48478134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 48478223 - 48478264
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  48478223 ctcataggctacattatctcttcgttgtagcaaacggagttt 48478264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 90494 - 90552
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||||    
T  90494 ctcataggctacattatctcttcgttgtagcaaacaaagttttcgcatttgttactatg 90552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 3165899 - 3165849
Alignment:
Q  17 ctacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3165899 ctacattatctcttcgttgtagcaaacagagtttttgcacttgttactatg 3165849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 25336616 - 25336674
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  25336616 ctcataggctacattatctcttcgttgtagcaaacagagttttcacatttgttactatg 25336674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 25336552 - 25336607
Alignment:
Q  12 atagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||| ||||||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  25336552 ataggctacattatctcttcgttgtagcaaacggagttttcacatttgttactatg 25336607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 3165973 - 3165916
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| || |||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  3165973 ctcataggctgcattatctcttcgt-gtagcaaacagagtttttgcaattgttactatg 3165916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5557902 - 5557959
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||||||| |||  ||||||||||||||    
T  5557902 ctcataggctacattatctcttcgttgtagcaaacagag-tttcacatttgttactatg 5557959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 3166040 - 3165982
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||  || |||| ||| |||||||||||    
T  3166040 ctcataggctacattatctcttcgttgtagcaaatggaattttcgcacttgttactatg 3165982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5557836 - 5557893
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  5557836 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 5557893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 20810443 - 20810385
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||||||  |||  |||| |||||||||    
T  20810443 ctcataggctacattatctcttcgttgtagcaaacagatatttcacattcgttactatg 20810385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 3165832 - 3165783
Alignment:
Q  17 ctacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 66  Q
    ||||||||||||||||||||| |||||| ||||||  || ||||||||||    
T  3165832 ctacattatctcttcgttgtagcaaacaaagttttcacacttgttactat 3165783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5557770 - 5557811
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  5557770 ctcataggctacattatctcttcgttgtagcaaacggagttt 5557811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 20810382 - 20810342
Alignment:
Q  3 ccatatctcatagactacattatctcttcgttgtaacaaac 43  Q
    ||||| ||||||| ||||||||||||||||||||| |||||    
T  20810382 ccatacctcataggctacattatctcttcgttgtagcaaac 20810342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 5250049 - 5249991
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||    
T  5250049 ctcataggctacattatctcttcgttgtagcaaatagagttttcgcatttgttactatg 5249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 28145162 - 28145220
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| |||| || |||||||||||||||    
T  28145162 ctcataggctacattatctcttcgttgtagcaaacggagtcttcgcatttgttactatg 28145220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26620488 - 26620431
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 66  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  26620488 ctcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactat 26620431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 26726467 - 26726410
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 66  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||| ||||| ||||||||    
T  26726467 ctcataggctacattatctcttcgttgtagcaaacggagttttcgcattcgttactat 26726410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 28145230 - 28145287
Alignment:
Q  10 tcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||||| ||||||||||||||||||||| ||||| ||| ||||||||| |||||||||    
T  28145230 tcataggctacattatctcttcgttgtagcaaacggagattttgcattcgttactatg 28145287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 6406611 - 6406653
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  6406611 ctcataggctacattatctcttcgttgtagcaaacagagtttt 6406653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 28145095 - 28145153
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| |||||||||||||| |||||| ||||| |||||||  ||||||||||||||    
T  28145095 ctcataggctacattatctctttgttgtagcaaacggagttttcacatttgttactatg 28145153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 31113192 - 31113150
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  31113192 ctcataggctacattatctcttcgttgtagcaaacagagtttt 31113150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34255632 - 34255591
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||||||||||    
T  34255632 ctcataggctacattatctcttcgttgtagcaaacagagttt 34255591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 5249982 - 5249939
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||||| |||||||||||||||||||||| |||||||| |||||    
T  5249982 ctcatacactacattatctcttcgttgtagcaaacagaattttt 5249939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 28145296 - 28145339
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||||    
T  28145296 ctcatagactacattatctcttcgttgtagcaaacggagatttt 28145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 33296124 - 33296078
Alignment:
Q  6 tatctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||||||||| ||||||||||||||||||||| ||||| || |||||    
T  33296124 tatctcataggctacattatctcttcgttgtagcaaactgatttttt 33296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 29934657 - 29934616
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  29934657 ctcataggctacattatctcttcgttgtagcaaacggagttt 29934616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34255566 - 34255525
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  34255566 ctcataggctacattatctcttcgttgtagcaaacggagttt 34255525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 34255698 - 34255657
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  34255698 ctcataggctacattatctcttcgttgtagcaaacggagttt 34255657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 31113265 - 31113201
Alignment:
Q  4 catatctcatagactacattatctcttcgttgtaacaaacaga-gtttttgcatttgttactatg 67  Q
    |||| ||||||  ||||||||||||||||||||| |||| ||| |||||  ||||||||||||||    
T  31113265 catacctcataagctacattatctcttcgttgtagcaaatagaggttttcacatttgttactatg 31113201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 31663619 - 31663564
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttact 64  Q
    ||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||    
T  31663619 ctcataggctacattatctcttcgttgtagcaaacagagttttcacatttgttact 31663564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 5578294 - 5578236
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||| ||||| |||||||||    
T  5578294 ctcataggctacattatctcttcgttgtagcaaacagagatttcgcattcgttactatg 5578236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 6735425 - 6735363
Alignment:
Q  6 tatctcatagactacattatctcttcgttgtaacaaacagag-tttttgcatttgttactatg 67  Q
    |||||||||  ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||    
T  6735425 tatctcataagctacattatctcttcgttgtagcaaacagagatttttacatttgttactatg 6735363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 4852583 - 4852626
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  4852583 ctcataggctacattatctcttcgttgtagcaaacagagttttt 4852626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 4852652 - 4852695
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||    
T  4852652 ctcataggctacattatctcttcgttgtagcaaacagagttttt 4852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 13713188 - 13713230
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  13713188 ctcataggctacattatctcttcgttgtagcaaacagagtttt 13713230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 31663426 - 31663376
Alignment:
Q  1 agccatatctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    |||| |||||||||| ||||||||||||||||||||| ||||| |||||||    
T  31663426 agccgtatctcataggctacattatctcttcgttgtagcaaacggagtttt 31663376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 31663485 - 31663427
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  31663485 ctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31663427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Original strand, 1505993 - 1506050
Alignment:
Q  10 tcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||||| ||||||||||||||||||||| ||||| |||||||  |||| |||||||||    
T  1505993 tcataggctacattatctcttcgttgtagcaaacggagttttcacattcgttactatg 1506050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1506184 - 1506233
Alignment:
Q  1 agccatatctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||| ||||||    
T  1506184 agccatacctcataggctacattatctcttcgttgtagcaaacggagttt 1506233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 1506125 - 1506183
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||| ||||||||||||||||| ||||| |||||||  |||| |||||||||    
T  1506125 ctcataggctatattatctcttcgttgtagcaaacggagttttcacattcgttactatg 1506183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 5599930 - 5599987
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  5599930 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 5599987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 5599997 - 5600039
Alignment:
Q  10 tcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||    
T  5599997 tcataggctacattatctcttcgttgtagcaaacggagttttt 5600039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 13713121 - 13713163
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  13713121 ctcataggctacattatctcttcgttgtagcaaacggagtttt 13713163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 13713321 - 13713363
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  13713321 ctcataggctacattatctcttcgttgtagcaaacggagtttt 13713363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 14190500 - 14190557
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  14190500 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 14190557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 31663350 - 31663308
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  31663350 ctcataggctacattatctcttcgttgtagcaaacggagtttt 31663308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 1506059 - 1506100
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  1506059 ctcataggctacattatctcttcgttgtagcaaactgagttt 1506100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 5578482 - 5578441
Alignment:
Q  17 ctacattatctcttcgttgtaacaaacagagtttttgcattt 58  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||    
T  5578482 ctacattatctcttcgttgtagcaaacggagttttcgcattt 5578441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5599798 - 5599839
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  5599798 ctcataggctacattatctcttcgttgtagcaaacggagttt 5599839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5599864 - 5599905
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  5599864 ctcataggctacattatctcttcgttgtagcaaacggagttt 5599905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 5909075 - 5909116
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  5909075 ctcataggctacattatctcttcgttgtagcaaacggagttt 5909116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 5909141 - 5909178
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacaga 46  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  5909141 ctcataggctacattatctcttcgttgtagcaaacaga 5909178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 6735476 - 6735431
Alignment:
Q  22 ttatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||||||||||||  |||||  |||||||||||||||||||||    
T  6735476 ttatctcttcgttgtagtaaacaatgtttttgcatttgttactatg 6735431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 13702628 - 13702669
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  13702628 ctcataggctacattatctcttcgttgtagcaaacggagttt 13702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 13713255 - 13713296
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  13713255 ctcataggctacattatctcttcgtcgtagcaaacagagttt 13713296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 13713383 - 13713431
Alignment:
Q  4 catatctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||| |||||||  |||||||||||||||||||| ||||| ||||||||    
T  13713383 catacctcataggatacattatctcttcgttgtagcaaacggagttttt 13713431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 31663281 - 31663229
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgtt 61  Q
    ||||||| ||||||||||| ||| ||||| ||||| || ||||||||||||||    
T  31663281 ctcataggctacattatctattcattgtagcaaacggattttttgcatttgtt 31663229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 3576 - 3634
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| |||||||||||||||||||||| |||| |||||||  ||||||||||||||    
T  3576 ctcataggctacattatctcttcgttgtaataaacggagttttcacatttgttactatg 3634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 3643 - 3701
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||  ||||||||||||||    
T  3643 ctcataggctacattatctcttcgttgtagcaaacaaagttttcacatttgttactatg 3701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 69805 - 69747
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||  ||||||||||||||    
T  69805 ctcataggctacattatctcttcgttgtagcaaacagatttttgtcatttgttactatg 69747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 69871 - 69814
Alignment:
Q  10 tcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||||| ||| ||||||||||||||||| ||||| |||||||  ||||||||||||||    
T  69871 tcataggctatattatctcttcgttgtagcaaacggagttttcacatttgttactatg 69814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 31346872 - 31346814
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| |||||||||||||  ||||| ||||||||    
T  31346872 ctcataggctacattatctcttcgttgtagcaaacagagttttcacattttttactatg 31346814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 31314998 - 31315056
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  31314998 ctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31315056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 31315065 - 31315107
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  31315065 ctcataggctacattatctcttcgttgtagcaaacagagtttt 31315107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 31315135 - 31315177
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  31315135 ctcataggctacattatctcttcgttgtagcaaacagagtttt 31315177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 31346988 - 31346934
Alignment:
Q  12 atagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactat 66  Q
    |||| ||||||||||||||||||||| ||||| |||||||  |||||||||||||    
T  31346988 ataggctacattatctcttcgttgtagcaaacggagttttcacatttgttactat 31346934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31347066 - 31347000
Alignment:
Q  1 agccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||| |||||||||  ||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  31347066 agccgtatctcatatgctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31347000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 31347125 - 31347067
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||  ||||| ||||||||    
T  31347125 ctcataggctacattatctcttcgttgtagcaaacggagttttcacattttttactatg 31347067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31315195 - 31315252
Alignment:
Q  1 agccatatctcatagactacattatctcttcgttgtaacaaacagagtttttgcattt 58  Q
    ||||||| ||||||| ||||||||||||||||||||| ||||| || |||| ||||||    
T  31315195 agccatacctcataggctacattatctcttcgttgtagcaaacggatttttcgcattt 31315252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 2743424 - 2743383
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  2743424 ctcataggctacattatctcttcgttgtagcaaacggagttt 2743383  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 2743490 - 2743449
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  2743490 ctcataggctacattatctcttcgttgtagcaaacggagttt 2743449  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 2743556 - 2743515
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttt 50  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  2743556 ctcataggctacattatctcttcgttgtagcaaacggagttt 2743515  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 11951319 - 11951282
Alignment:
Q  6 tatctcatagactacattatctcttcgttgtaacaaac 43  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  11951319 tatctcataggctacattatctcttcgttgtagcaaac 11951282  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 15088591 - 15088641
Alignment:
Q  17 ctacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  15088591 ctacattatctcttcgttttagcaaacggagtttttgcatttgttactatg 15088641  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 22207980 - 22208038
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| |||||||||||||| |||||| |||||||| |||||| |||||||||||||    
T  22207980 ctcataggctacattatctcttggttgtagcaaacagaatttttgaatttgttactatg 22208038  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 22211199 - 22211249
Alignment:
Q  17 ctacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    |||||||||||||||||| || ||||| |||||||||||||||||||||||    
T  22211199 ctacattatctcttcgttttagcaaacggagtttttgcatttgttactatg 22211249  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 14114858 - 14114823
Alignment:
Q  17 ctacattatctcttcgttgtaacaaacagagttttt 52  Q
    ||||||||||||||||||||| ||||||||||||||    
T  14114858 ctacattatctcttcgttgtagcaaacagagttttt 14114823  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22207700 - 22207751
Alignment:
Q  1 agccatatctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||| |||||||||| ||||||||||||||||||||| |||||  |||||||    
T  22207700 agccgtatctcataggctacattatctcttcgttgtagcaaacgaagttttt 22207751  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 22207649 - 22207699
Alignment:
Q  17 ctacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||||||||||||||||||||||| || ||||  ||||| ||||||||    
T  22207649 ctacattatctcttcgttgtaacaaacggaattttcacatttattactatg 22207699  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 22207777 - 22207819
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||    
T  22207777 ctcataggctacattatctcttcgttgtagcaaacggagtttt 22207819  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 51844364 - 51844422
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| |||||||||||||||| |||| ||||| ||| ||| ||||| |||||||||    
T  51844364 ctcataggctacattatctcttcgctgtagcaaacggagatttcgcattcgttactatg 51844422  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 14114794 - 14114754
Alignment:
Q  12 atagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    |||| ||||||||||||||||||||| ||||| ||||||||    
T  14114794 ataggctacattatctcttcgttgtagcaaacggagttttt 14114754  T

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Target: scaffold0060 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 39974 - 39927
Alignment:
Q  4 catatctcatagactacattatctcttcgttgtaacaaacagagtttt 51  Q
    |||| ||||||| ||||||||||||||||||||| |||||||| ||||    
T  39974 catacctcataggctacattatctcttcgttgtagcaaacagaatttt 39927  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Original strand, 41528655 - 41528698
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagttttt 52  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||    
T  41528655 ctcataggctacattatctcttcgttgtagcaaacggagttttt 41528698  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 41528457 - 41528514
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  41528457 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528514  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 41528523 - 41528580
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  41528523 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528580  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 41528589 - 41528646
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcatttgttactatg 67  Q
    ||||||| ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||    
T  41528589 ctcataggctacattatctcttcgttgtagcaaacggag-tttcacatttgttactatg 41528646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 37368959 - 37368910
Alignment:
Q  9 ctcatagactacattatctcttcgttgtaacaaacagagtttttgcattt 58  Q
    ||||||| ||||||||||||||||||||| ||||| || ||||| |||||    
T  37368959 ctcataggctacattatctcttcgttgtagcaaacggattttttacattt 37368910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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