View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_low_4 (Length: 357)
Name: NF10183_low_4
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 53927264 - 53926925
Alignment:
| Q |
1 |
cgaactccaaaagtcgaataccttgcaagacgtggattatattccaacaaggccttagcctcttgaacatcaccatctcttgctgcagaaactagtctct |
100 |
Q |
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| T |
53927264 |
cgaactccaaaagtcgaataccttgcaagacgtggattatattccaacaaggccttagcctcttgaacatcaccatctcttgctgcagaaactagtctct |
53927165 |
T |
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| Q |
101 |
ccccagatgcagaacatccaaaagaattcccaaccaggcttagaaatttcatgttcctcaataattattaatcaacacaacaattaactataatcaagaa |
200 |
Q |
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| T |
53927164 |
ccccagatgcagaacatccaaaagaattcccaaccaggcttagaaatttcatgttcctcaataattattaatcaacacaacaattaactataatcaagaa |
53927065 |
T |
|
| Q |
201 |
attggaatcagggccaaggttccttcacacacagccttattaaaataaaaataaaatcccaaatttcactctttgacaaaattctctgacgtgaaatctt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53927064 |
attggaatcagggccaaggttccttcacacacagccttattaaaa-aaaaaaaaaatcccaaatttcactctttgacaaaattctctgacgtgaaatctt |
53926966 |
T |
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| Q |
301 |
caaaccttaatcaattcaaaatgtttatatatacaatcatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
53926965 |
caaaccttaatcaattcaaaatgtttatatatacaatcatt |
53926925 |
T |
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