View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10183_low_6 (Length: 269)
Name: NF10183_low_6
Description: NF10183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10183_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 251
Target Start/End: Original strand, 8253236 - 8253480
Alignment:
| Q |
7 |
cttttttcttgtatgattctttactaactctgtttccttatataataagcaggcagctatatcaatgtctgcccagatagaattattcaaagaatatatt |
106 |
Q |
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| T |
8253236 |
cttttttcttgtatgattctttactaactctgtttccttatataataagcaggcagctatatcaatgtctgcccagatagaattattcaaagaatatatt |
8253335 |
T |
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| Q |
107 |
gtgaagctgaaaggaatagttggtgaagatagaacaaacttcatcttagccaatagtatttattttgtgctagtaggaagcaatgatatttctaacacat |
206 |
Q |
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| T |
8253336 |
gtgaagctgaaaggaatagttggtgaagatagaacaaacttcatcttagccaatagtatttattttgtgctagtaggaagcaatgatatttctaacacat |
8253435 |
T |
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| Q |
207 |
acttcttgtttcatgtgagacaagttaattatgattttccttcat |
251 |
Q |
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| T |
8253436 |
acttcttgtttcatgcgagacaagttaattatgattttccttcat |
8253480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 8243647 - 8243821
Alignment:
| Q |
56 |
caggcagctatatcaatgtctgcccagatagaattattcaaagaatatattgtgaagctgaaaggaatagttggtgaagatagaacaaacttcatcttag |
155 |
Q |
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| T |
8243647 |
caggtagctatatctatgtctggccagctagacttattcaaagattacattgtgaggcttaaaggactatttggtgaagatagagcaaatttcatcttag |
8243746 |
T |
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| Q |
156 |
ccaatagtatttattttgtgctagtaggaagcaatgatatttctaacacatacttcttgtttcatgtgagacaag |
230 |
Q |
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| T |
8243747 |
ccaatagtctttttcttgtggtactaggaagcaatgacatttctaacacgtactacttgtctcatctaagacaag |
8243821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 8288938 - 8289009
Alignment:
| Q |
92 |
ttcaaagaatatattgtgaagctgaaaggaatagttggtgaagatagaacaaacttcatcttagccaatagt |
163 |
Q |
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| T |
8288938 |
ttcaaagaatacattgggaagttgaaaggcattgttggtgaggaaagaacaaacttcatactggccaatagt |
8289009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 8233024 - 8233114
Alignment:
| Q |
125 |
gttggtgaagatagaacaaacttcatcttagccaatagtatttattttgtgctagtaggaagcaatgatatttctaacacatacttcttgt |
215 |
Q |
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| T |
8233024 |
gttggagaagacagaacaaacttcatcttggcaaatagtcttttccttgtggtattgggcagtaatgatatttccaacacatatttcttgt |
8233114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 8271199 - 8271271
Alignment:
| Q |
91 |
attcaaagaatatattgtgaagctgaaaggaatagttggtgaagatagaacaaacttcatcttagccaatagt |
163 |
Q |
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| T |
8271199 |
attcaaagaatatattgggaagcttaatgcactcgttggagagaatagaacaaagttcatcatagccaatagt |
8271271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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