View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_high_4 (Length: 241)
Name: NF10184_high_4
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7238090 - 7238313
Alignment:
| Q |
1 |
ttctttcctcctatttttggcgtctaacacccaagtacctgaaatgtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaa |
100 |
Q |
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| T |
7238090 |
ttctttcctcccatttttggcgtctaacacccaagtacctgaaatgtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaa |
7238189 |
T |
|
| Q |
101 |
acgaaaataagctttttagataatgtactttgtgtgttatcaattgcacgcctgtatattcatatcttatactcattacttgcactcttatttaccacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7238190 |
acgaaaataagctttttagataatgtactttgtgtgttatcaattgcacgcctgtatattcatatcttatactcattacttgcactcttatttaccacaa |
7238289 |
T |
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| Q |
201 |
ttcgttcataaaggcacacataga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
7238290 |
ttcgttcataaaggcacacataga |
7238313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 1826372 - 1826295
Alignment:
| Q |
67 |
accatgcaaaacacgacaaatgactctaaaacaaacgaaaat-aagctttttagataatgtactttgtgtgttatcaa |
143 |
Q |
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||||||||| |||| | || ||||||||||||||| | | || ||||| |||||| |||||| ||||||||||||||| |
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| T |
1826372 |
accatgcaagacacaataattgactctaaaacaaatggatatcaagctatttagacaatgtattttgtgtgttatcaa |
1826295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 29565889 - 29565815
Alignment:
| Q |
32 |
caagtacctgaaatgtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaa |
106 |
Q |
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| T |
29565889 |
caagtacctgaaatgtaaacaaaacaccaacatacaccatgtaaaacgcgacaaatgactctaaaacaaatgaaa |
29565815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 33994999 - 33995032
Alignment:
| Q |
67 |
accatgcaaaacacgacaaatgactctaaaacaa |
100 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
33994999 |
accatgcaaaacacgacaaatggctctaaaacaa |
33995032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 17334526 - 17334567
Alignment:
| Q |
60 |
agcagacaccatgcaaaacacgacaaatgactctaaaacaaa |
101 |
Q |
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|||||| |||||||||||||||||||||||| | |||||||| |
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| T |
17334526 |
agcagataccatgcaaaacacgacaaatgaccccaaaacaaa |
17334567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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