View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_1 (Length: 593)
Name: NF10184_low_1
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 42670418 - 42669858
Alignment:
| Q |
19 |
taatcacccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagcaccttaagtgcagccttaccaccatccaca |
118 |
Q |
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| T |
42670418 |
taattacccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatgtggtggtttaagcaccttaagagcagccttaccaccatccaca |
42670319 |
T |
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| Q |
119 |
caggtaactactgctccatattttcgcagaacaccttctgcaacttttctgttcactgcgttatcatcaaccaccaaaattcgtttgtgtatcaataaat |
218 |
Q |
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| T |
42670318 |
caggtaactactgctccatattttcgcagaacaccttctgcaacttttctgttcactgcgttatcatcaaccaccaaaattcgtttgtgtatcaataaat |
42670219 |
T |
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| Q |
219 |
tttcaagttgggatactttctttctgtctatttgttttctcccagttccaagggattctctgtagtagcgaatcaaaacactttgccaaagaggcttcat |
318 |
Q |
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| T |
42670218 |
tttcaagttgggatactttctttctgtctatttgttttctcccagttccaagggattctctgtagtagcgaatcaaaacactttgccaaagaggcttcat |
42670119 |
T |
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| Q |
319 |
tagtacatcatctatgataccaactgactttagctcctttcgctcattggggctaaggtgggtggccaggagaaaaatctttggaaagtttagcgagtcc |
418 |
Q |
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| T |
42670118 |
tagtacatcatctatgataccaactgactttagctcctttcgctcgttggggctaaggtgggtggccaggagaaaaatctttggaaagtttagcgagtcc |
42670019 |
T |
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| Q |
419 |
cctttgacgccattctgtccttgtttcttgattgcgtataagatgctactttccttgtcccatgaatccttgtctataagaatcatggccaattgtgtcg |
518 |
Q |
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| T |
42670018 |
cctttgacgccattctgtccttgtttcttgattgcgtataagatgctactttccttgtcccatgaatccttgtctataagaatcatggccaattgtgtca |
42669919 |
T |
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| Q |
519 |
gcatactgaaagaatggaaacaaaagcaataattagtaaatattataataacctgatgtcc |
579 |
Q |
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| T |
42669918 |
gcatactgaaagaacggaaacaaaagcaataattagtaaatattttaataacctaatgtcc |
42669858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 19388370 - 19388421
Alignment:
| Q |
24 |
acccgtccatttctggcatttggagatccatgaagcaagcatcaaaattatg |
75 |
Q |
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| T |
19388370 |
acccatccatttctggcatttgaatgtccatgaagcaagcatcaaatttatg |
19388421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 44819113 - 44819158
Alignment:
| Q |
24 |
acccgtccatttctggcatttggagatccatgaagcaagcatcaaa |
69 |
Q |
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| T |
44819113 |
acccgtccatttctggcatttgaatatccatgaagcaagcatcaaa |
44819158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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