View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_10 (Length: 290)
Name: NF10184_low_10
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 7764009 - 7763756
Alignment:
| Q |
15 |
gggaagacacacatggaaaaagttctggtttgtataagatgttatttgctattcc-ttgcagtagatcattttccatattatattttccaaattttaaat |
113 |
Q |
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| T |
7764009 |
gggaagacacacatggaaaaagttctggtttgtat--gatgttatttgctattcccttgcagtagattg------atattatattttccaaattttaaat |
7763918 |
T |
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| Q |
114 |
gactatatcannnnnnncgcaatccttttaagagatcgtttggttttactctttggcagcctcacatggaaaaagttggaagagttagtgggattcagtc |
213 |
Q |
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| T |
7763917 |
gactatatcatttttttcgcaatccttttaagagatcgtttggttttactctttggcagcctcacatggaaaaagttggaagagttagtgggattcagtc |
7763818 |
T |
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| Q |
214 |
ttttaatcgtcaaacttcggtatcacataacttgattaatcttgatggccaa-ggttctgat |
274 |
Q |
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| T |
7763817 |
ttttaatcgtcaaacttcggtatcacataacttaattaatcttgatggccaatggttctgat |
7763756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 107 - 272
Target Start/End: Original strand, 33362371 - 33362536
Alignment:
| Q |
107 |
tttaaatgactatatcannnnnnncgcaatccttttaagagatcgtttggttttactctttggcagcctcacatggaaaaagttggaagagttagtggga |
206 |
Q |
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| T |
33362371 |
tttaaatgactatatcattttgttcgcaatccttttaagagatcgtctgattttacttttttgcagcctggcatggaaaaagttggaacagttagtggga |
33362470 |
T |
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| Q |
207 |
ttcagtcttttaatcgtcaaacttcggtatcacataacttgattaatcttgatggccaaggttctg |
272 |
Q |
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| T |
33362471 |
ttcaatcttttaacagtcaacctgcagtatcacataactcaatcaatgttgagggccaaggttctg |
33362536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 41441174 - 41441220
Alignment:
| Q |
34 |
aagttctggtttgtataagatgttatttgctattccttgcagtagat |
80 |
Q |
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| T |
41441174 |
aagttgtggtttgtataagatgttatttgctatatcttgcagtagat |
41441220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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