View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_11 (Length: 280)
Name: NF10184_low_11
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 39 - 271
Target Start/End: Complemental strand, 1044837 - 1044605
Alignment:
| Q |
39 |
ttggttactacaacaatccttttcattaacacaaagctcaaatggtattacaaaaatcaggcacataatggttctacacactgtgtgtcctagcagagaa |
138 |
Q |
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| T |
1044837 |
ttggttactacaacaatccttttcattaacacaaagctcaaatggtattacaaaaatcaggtacataatggttctacacactgtgtgtcctagcagagaa |
1044738 |
T |
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| Q |
139 |
gctagtatgagaagaatgaataaaaaatataactatgtctataattaacaaaattcttaattaagtgaccaaattcactgcaaaaccaatgtataagaag |
238 |
Q |
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| T |
1044737 |
gctagtatgagaagaatgaataaaaaatataactatgtctataattaacaaaattcttaattaagtgaccaaattcactgcaaaaccaatgtataagaag |
1044638 |
T |
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| Q |
239 |
aaaaacaacttattaatatggaggtccaccctt |
271 |
Q |
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| T |
1044637 |
aaaaacaacttattaatatggaggtccaccctt |
1044605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 1034395 - 1034317
Alignment:
| Q |
66 |
aacacaaagctcaaatggtattacaaaaatcaggcacataatggttctacacactgtgtgtcctagcagagaagctagtatg |
147 |
Q |
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| T |
1034395 |
aacacaaagctcatatggtataa--aatatcaggtacataatagtt-tacacactgtgtgtcgtagcagtgaagctagtatg |
1034317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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