View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_13 (Length: 278)
Name: NF10184_low_13
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 28 - 262
Target Start/End: Complemental strand, 43539733 - 43539499
Alignment:
| Q |
28 |
attaatgataaaaaaccaaataaagaatatttatcaccttcatctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataattac |
127 |
Q |
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| T |
43539733 |
attaatgataaaaaaccaaaaaaagaatatttatcaccttcatctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataattac |
43539634 |
T |
|
| Q |
128 |
ctttttactcatataagactacaacattaggcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttcaaactggcatccctaaacac |
227 |
Q |
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| T |
43539633 |
ctttttactcatataagactacaacattaggcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttcaaaatggcatccctaaacac |
43539534 |
T |
|
| Q |
228 |
attctcaatggtctatctttaatagaacatgttaa |
262 |
Q |
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| T |
43539533 |
attctcaatggtctatctttaatagaacatgttaa |
43539499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 28 - 228
Target Start/End: Complemental strand, 35676355 - 35676155
Alignment:
| Q |
28 |
attaatgataaaaaa-ccaaataaagaatatttatcaccttcatctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataatta |
126 |
Q |
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||||||||||||||| ||||| ||| |||||| | || ||||||||| |||||||||| ||||||||||| |||||||||||||||||| ||| ||||| |
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| T |
35676355 |
attaatgataaaaaaaccaaaaaaataatattcaccatcttcatctccatctttgcaaattcaaagttgt--ctctttttgaaattttcagttagaatta |
35676258 |
T |
|
| Q |
127 |
cctttttactcatataagactacaacattaggcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttc-aaactggcatccctaaac |
225 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
35676257 |
cctttttactcatataagactacagcattaagcaatagaattgaaaaatctgtactttttggttgctcaaattcaaccttcaaaaatggcatccctaaac |
35676158 |
T |
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| Q |
226 |
aca |
228 |
Q |
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||| |
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| T |
35676157 |
aca |
35676155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 59741 - 59790
Alignment:
| Q |
28 |
attaatgataaaaaaccaaataaagaatatttatcaccttcatctctatc |
77 |
Q |
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||||||||||||||| |||| |||||||| | |||| ||||||||||||| |
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| T |
59741 |
attaatgataaaaaaacaaaaaaagaatactcatcatcttcatctctatc |
59790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 29979822 - 29979903
Alignment:
| Q |
70 |
tctctatctttgcaatttcaaagttgtgtctctttttgaaattttcaattataattacctttttactcatataagactacaa |
151 |
Q |
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| T |
29979822 |
tctctatctttgcaatttcaaagttgtctctctttttgaaattttcaattagaattacctttttactcatataagactacaa |
29979903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 262
Target Start/End: Original strand, 29979901 - 29979969
Alignment:
| Q |
194 |
caaattcaaccttcaaactggcatccctaaacacattctcaatggtctatctttaatagaacatgttaa |
262 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29979901 |
caaattcaaccttcaaaatggcatccctaaacacattctcaatggtctatctttaatagaatatgttaa |
29979969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 24381961 - 24381895
Alignment:
| Q |
103 |
ttttgaaattttcaattataat-tacctttttactcatataagactacaacattaggcaatagaatt |
168 |
Q |
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||||||||| ||||| || ||| |||| |||| |||||||||||||||||||||| |||||| |||| |
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| T |
24381961 |
ttttgaaatgttcaaatagaatgtacccttttcctcatataagactacaacattatgcaatataatt |
24381895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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