View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_14 (Length: 253)
Name: NF10184_low_14
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 52712045 - 52711803
Alignment:
| Q |
1 |
caaactctctttctctgcgactatcactcatgttctctatcaaacctgcatttcaaatttcctatacttgtgttacaaaattattcaacaaaacatatta |
100 |
Q |
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|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52712045 |
caaagtctctttctcttcgactatcactcatgttctccatcaaacctgcatttcaaatttcctatacttgtgttacaaaattattcaacaaaacatatta |
52711946 |
T |
|
| Q |
101 |
ggtcc-actaccatttccaccaccaatgctatctttcttttttgtgccaacacttgtagaacaaaaaagcattggatttggaagaggttaagaaccacca |
199 |
Q |
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| T |
52711945 |
ggtcccactaccatttccaccaccaatgctatctttcttttttgtgcccacacttgtagaacaaaaaagcattggatttggaagagggtaagaaccacca |
52711846 |
T |
|
| Q |
200 |
ttattattaaacaactcaccaccgatactccgccctctcctat |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52711845 |
ttattattaaacaactcaccaccgatactccgccctctcctat |
52711803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 52717260 - 52717123
Alignment:
| Q |
96 |
tattaggtccactaccatttccaccaccaatgctatctttcttttttgtgccaacacttgtagaacaaaaaagcattggatttggaagaggttaagaacc |
195 |
Q |
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||||||||||| ||||| ||||||| || |||||||||||||| ||||||||| |||||||||||| | ||||||| ||||||||| |||| |||||||| |
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| T |
52717260 |
tattaggtccattaccacttccaccgcccatgctatctttcttctttgtgccagcacttgtagaaccagaaagcataggatttggaggagggtaagaacc |
52717161 |
T |
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| Q |
196 |
accattattattaaacaactcaccaccgatactccgccctc |
236 |
Q |
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||||| |||| ||||||||||||| ||||||| ||||| |
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| T |
52717160 |
accat---tattgaacaactcaccactcatactcctccctc |
52717123 |
T |
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