View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10184_low_15 (Length: 252)

Name: NF10184_low_15
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10184_low_15
NF10184_low_15
[»] chr8 (4 HSPs)
chr8 (13-252)||(6097761-6098000)
chr8 (45-212)||(6179771-6179938)
chr8 (34-182)||(6047170-6047318)
chr8 (59-212)||(6188545-6188698)
[»] chr5 (1 HSPs)
chr5 (78-174)||(37450196-37450292)
[»] scaffold0570 (1 HSPs)
scaffold0570 (80-120)||(9747-9787)
[»] scaffold0201 (1 HSPs)
scaffold0201 (80-120)||(13553-13593)
[»] chr3 (9 HSPs)
chr3 (80-111)||(23353885-23353916)
chr3 (80-111)||(23406734-23406765)
chr3 (80-111)||(23441865-23441896)
chr3 (80-111)||(23449255-23449286)
chr3 (80-111)||(23465388-23465419)
chr3 (80-111)||(23474397-23474428)
chr3 (80-114)||(23456016-23456050)
chr3 (83-111)||(21088560-21088588)
chr3 (80-120)||(23435444-23435484)
[»] scaffold0005 (1 HSPs)
scaffold0005 (78-120)||(178282-178324)
[»] chr4 (2 HSPs)
chr4 (78-120)||(14638968-14639010)
chr4 (80-120)||(3811984-3812024)
[»] chr2 (1 HSPs)
chr2 (83-129)||(16334755-16334801)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 6098000 - 6097761
Alignment:
Q  13 caaaggagaagaggttggtccagcacttgttcaagcaatccaagaatcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  6098000 caaaggagaagaggttggtccagcacttgttcaagcaatccaagaatcacgtatgtctctcgtggttttctcagaaaactatgcttcctcaaaatggtgt 6097901  T
Q  113 ttagatgaactcctcaaaatactcgaatgtagaaaatttcatgatcaagtggttatacctgtgtgctatagaattgatccatcagatgtacgtcatcaga 212  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6097900 ttggatgaactcctcaaaatactcgaatgtggaaaatttcatgatcaagtggttatacctgtgttctatagaattgatccatcagatgtacgtcatcaga 6097801  T
Q  213 cgggaagttacaaggaaccatttgcaaattatgagataga 252  Q
    |||||||||||||||||||||||||||||||  |||||||    
T  6097800 cgggaagttacaaggaaccatttgcaaattaccagataga 6097761  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 212
Target Start/End: Complemental strand, 6179938 - 6179771
Alignment:
Q  45 aagcaatccaagaatcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaatactcgaatgtag 144  Q
    ||||||||||||| ||||| |||||||| ||  |||||||||||||||||||  ||||||| ||||| || |||||||||||| | |||||  |||| ||    
T  6179938 aagcaatccaagattcacatatgtctcttgtagttttctcagaaaactatgcaacctcaaagtggtgcttggatgaactcctccatatactacaatgcag 6179839  T
Q  145 aaaatttcatgatcaagtggttatacctgtgtgctatagaattgatccatcagatgtacgtcatcaga 212  Q
    ||||  ||||| ||| || || |||||||||| |||||  || ||||| ||| |||| ||||||||||    
T  6179838 aaaacatcatggtcaggtagtaatacctgtgttctataacatagatccttcacatgttcgtcatcaga 6179771  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 6047318 - 6047170
Alignment:
Q  34 agcacttgttcaagcaatccaagaatcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaata 133  Q
    |||||||| | ||||||||||||| |||| ||| ||||| ||  | |||||  |||| |||||  ||||||| ||||| ||  |||||||||||||||||    
T  6047318 agcacttgctgaagcaatccaagactcacgcatatctcttgttgtattctccaaaaattatgcaacctcaaagtggtgcttgaatgaactcctcaaaata 6047219  T
Q  134 ctcgaatgtagaaaatttcatgatcaagtggttatacctgtgtgctata 182  Q
    || ||||| | |||| |||||| |||||| ||||||||||||| |||||    
T  6047218 cttgaatgcaaaaaacttcatggtcaagttgttatacctgtgttctata 6047170  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 212
Target Start/End: Complemental strand, 6188698 - 6188545
Alignment:
Q  59 tcacacatgtctctcgtgattttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaatactcgaatgtagaaaatttcatgatc 158  Q
    ||||| |||||||| ||  |||||||| || |||||||  | ||||| ||||| || ||||||||| || | |||||  |||| |||||| || |||  |    
T  6188698 tcacatatgtctcttgtagttttctcaaaagactatgcaacttcaaagtggtgcttggatgaactcgtccacatacttcaatgcagaaaacttaatggac 6188599  T
Q  159 aagtggttatacctgtgtgctatagaattgatccatcagatgtacgtcatcaga 212  Q
    | || ||||||||||||| |||||  || ||||||||| |||||||||||||||    
T  6188598 atgtagttatacctgtgttctataacatagatccatcacatgtacgtcatcaga 6188545  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 37450196 - 37450292
Alignment:
Q  78 ttttctcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaaaatactcgaatgtagaaaatttcatgatcaagtggttatacctgt 174  Q
    ||||||| ||||| | |||| | |||||||||||||| || |||||| ||||| | |||||||||||||||  ||||| |||| | |||||||||||    
T  37450196 ttttctctgaaaattttgctacatcaaaatggtgtttggaagaactcgtcaaagtgctcgaatgtagaaaagatcatggtcaaattgttatacctgt 37450292  T

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Target: scaffold0570 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 9747 - 9787
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 120  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  9747 ttctcagaaaactatgcttcctcaaaatggtgcttaaatga 9787  T

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Target: scaffold0201 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 13593 - 13553
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 120  Q
    |||||||||||||||||||||||||||||||| ||| ||||    
T  13593 ttctcagaaaactatgcttcctcaaaatggtgcttaaatga 13553  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 23353916 - 23353885
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtg 111  Q
    ||||||||||||||||||||||||||||||||    
T  23353916 ttctcagaaaactatgcttcctcaaaatggtg 23353885  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 23406765 - 23406734
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtg 111  Q
    ||||||||||||||||||||||||||||||||    
T  23406765 ttctcagaaaactatgcttcctcaaaatggtg 23406734  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 23441896 - 23441865
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtg 111  Q
    ||||||||||||||||||||||||||||||||    
T  23441896 ttctcagaaaactatgcttcctcaaaatggtg 23441865  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 23449286 - 23449255
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtg 111  Q
    ||||||||||||||||||||||||||||||||    
T  23449286 ttctcagaaaactatgcttcctcaaaatggtg 23449255  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 23465419 - 23465388
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtg 111  Q
    ||||||||||||||||||||||||||||||||    
T  23465419 ttctcagaaaactatgcttcctcaaaatggtg 23465388  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 111
Target Start/End: Complemental strand, 23474428 - 23474397
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtg 111  Q
    ||||||||||||||||||||||||||||||||    
T  23474428 ttctcagaaaactatgcttcctcaaaatggtg 23474397  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 23456050 - 23456016
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtgttt 114  Q
    |||||||||||||| ||||||||||||||||||||    
T  23456050 ttctcagaaaactacgcttcctcaaaatggtgttt 23456016  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 21088588 - 21088560
Alignment:
Q  83 tcagaaaactatgcttcctcaaaatggtg 111  Q
    |||||||||||||||||||||||||||||    
T  21088588 tcagaaaactatgcttcctcaaaatggtg 21088560  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 23435484 - 23435444
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 120  Q
    |||||||||||||||||||| ||||||||||| ||| ||||    
T  23435484 ttctcagaaaactatgcttcttcaaaatggtgcttaaatga 23435444  T

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Target: scaffold0005 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 178282 - 178324
Alignment:
Q  78 ttttctcagaaaactatgcttcctcaaaatggtgtttagatga 120  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  178282 ttttctcagaaaactatgcatcctcaacatggtgcttagatga 178324  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 14639010 - 14638968
Alignment:
Q  78 ttttctcagaaaactatgcttcctcaaaatggtgtttagatga 120  Q
    ||||||||||||||||||| ||||||| |||||| ||||||||    
T  14639010 ttttctcagaaaactatgcatcctcaacatggtgcttagatga 14638968  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 3812024 - 3811984
Alignment:
Q  80 ttctcagaaaactatgcttcctcaaaatggtgtttagatga 120  Q
    |||||||||||||||||||| ||| | ||||||||||||||    
T  3812024 ttctcagaaaactatgcttcttcacattggtgtttagatga 3811984  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 16334755 - 16334801
Alignment:
Q  83 tcagaaaactatgcttcctcaaaatggtgtttagatgaactcctcaa 129  Q
    ||||||||||||||||| ||||||||||||||  |||||||| ||||    
T  16334755 tcagaaaactatgcttcttcaaaatggtgtttgaatgaactcgtcaa 16334801  T

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