View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10184_low_19 (Length: 242)

Name: NF10184_low_19
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10184_low_19
NF10184_low_19
[»] chr1 (12 HSPs)
chr1 (2-231)||(1793407-1793636)
chr1 (2-218)||(2012670-2012889)
chr1 (6-226)||(2011168-2011388)
chr1 (3-226)||(2007182-2007408)
chr1 (6-181)||(2020466-2020641)
chr1 (2-187)||(4334120-4334305)
chr1 (2-187)||(3379479-3379664)
chr1 (19-111)||(3373532-3373624)
chr1 (72-187)||(3362468-3362583)
chr1 (82-185)||(3342004-3342107)
chr1 (135-192)||(4322365-4322422)
chr1 (19-111)||(6600959-6601051)
[»] chr2 (3 HSPs)
chr2 (2-187)||(20935182-20935367)
chr2 (2-218)||(20953689-20953905)
chr2 (44-231)||(20924137-20924324)
[»] chr4 (1 HSPs)
chr4 (45-202)||(21238216-21238373)


Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 1793636 - 1793407
Alignment:
Q  2 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 101  Q
    ||||||||||||||||  |||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1793636 aagccaaactaaatgagcactcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaatttccttcaagtcattg 1793537  T
Q  102 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793536 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaat 1793437  T
Q  202 tgctataaatcagaatatgatgtttataat 231  Q
    |||||||||||||||||| |||||||||||    
T  1793436 tgctataaatcagaatataatgtttataat 1793407  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 2012889 - 2012670
Alignment:
Q  2 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 101  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| | |    
T  2012889 aagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaatttctttcaagtcgtag 2012790  T
Q  102 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactga---agtagaaaagaaa 198  Q
    |||||||| |||||||||||||| |||| ||| |||||||||||||||||| ||  ||||||||||||||||| ||||||||||    ||| ||||||||    
T  2012789 aagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaatactgatattgtacaaaagaaa 2012690  T
Q  199 aattgctataaatcagaata 218  Q
    |||||||  |||||||||||    
T  2012689 aattgctccaaatcagaata 2012670  T

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Target: chr1; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 2011388 - 2011168
Alignment:
Q  6 caaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagt 105  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| ||||||||||    
T  2011388 caaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaatttccttcaactcattgaagt 2011289  T
Q  106 ttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgct 205  Q
    |||| |||||||| ||| |  ||| ||| |||||||||||||||||| ||  ||||||||||||||||| |||||||||| ||| ||  ||||| |||||    
T  2011288 ttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaatactgatgtacaacggaaaatttgct 2011189  T
Q  206 ataaatcagaatatgatgttt 226  Q
     | ||||||||||| ||||||    
T  2011188 ctgaatcagaatataatgttt 2011168  T

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Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 2007408 - 2007182
Alignment:
Q  3 agccaaactaaatgatta---ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcat 99  Q
    ||||||||||||||| ||   ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| |||||||||||| |||||||    
T  2007408 agccaaactaaatgagtagtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaatttccttaaagtcat 2007309  T
Q  100 tgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaa 199  Q
     ||||||||| || |||||||||||||||| ||| |||||||||||||||||| ||  ||| ||| |||||||||  ||||||||| ||| || | ||||    
T  2007308 agaagtttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaatactgatgtacaacataaaa 2007209  T
Q  200 attgctataaatcagaatatgatgttt 226  Q
    ||| || ||||||||||||| ||||||    
T  2007208 atttctctaaatcagaatataatgttt 2007182  T

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Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 2020641 - 2020466
Alignment:
Q  6 caaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagt 105  Q
    |||| ||||||| ||||||| | ||| | ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||| |||||    
T  2020641 caaagtaaatgagtactcacaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaatttccttaaagtcatagaagt 2020542  T
Q  106 ttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaata 181  Q
    |||| || |||||||||||||||| ||| |||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  2020541 ttatactaaaccaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaata 2020466  T

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Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 187
Target Start/End: Original strand, 4334120 - 4334305
Alignment:
Q  2 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 101  Q
    |||| |||||||| || |||||||  |||| |||| || || ||| ||||| |||||||| |||||||| ||||| || |||||||||| || || || |    
T  4334120 aagctaaactaaacgagtactcacagatatttttaatttttgaaggttaggtgagcttctgaacacacaaagagcggccgaaatttcctccatgttatcg 4334219  T
Q  102 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 187  Q
    ||||||||| ||||  ||||| |  ||| ||| |||||||||||||||||| ||  ||||| |||||||||||  |||||||||||    
T  4334220 aagtttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaag 4334305  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 3379664 - 3379479
Alignment:
Q  2 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 101  Q
    |||||||||||||| | ||||||| ||||| |  | || |||||| ||||| |||||||| | ||  || || ||||| ||||||||||||||| |||||    
T  3379664 aagccaaactaaataagtactcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttcaagacattg 3379565  T
Q  102 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 187  Q
    |||||||| | |||  |||||||  ||| || ||||||||||||||||||| ||  ||  ||| |||||||||  |||||||||||    
T  3379564 aagtttatacataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatcacctgcagccaaatactgaag 3379479  T

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Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 3373624 - 3373532
Alignment:
Q  19 tactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgc 111  Q
    ||||||| ||||| | || || |||||||||||| |||||||| | ||  || ||||||||||||||||||||||||||||||||||||||||    
T  3373624 tactcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgc 3373532  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 3362583 - 3362468
Alignment:
Q  72 agagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctg 171  Q
    ||||||||  |||||| ||||||||||| ||||| ||||| |||  |||||| | | | ||||||||||||||| |||||| || |||||||||||||||    
T  3362583 agagcagccaaaattttcttcaagtcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaacacctg 3362484  T
Q  172 cagataaatactgaag 187  Q
    |||  |||||||||||    
T  3362483 cagccaaatactgaag 3362468  T

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Target: chr1; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 185
Target Start/End: Complemental strand, 3342107 - 3342004
Alignment:
Q  82 aaatttccttcaagtcattgaagtttatgctta-accaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaat 180  Q
    |||||| |||||||||||||||||||||||||| || ||| || | ||| |||||||||||||||||||||| ||  |||||||| ||||||||  ||||    
T  3342107 aaattttcttcaagtcattgaagtttatgcttacacgaaaaattt-ttagattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 3342009  T
Q  181 actga 185  Q
    |||||    
T  3342008 actga 3342004  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 4322365 - 4322422
Alignment:
Q  135 atacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaa 192  Q
    |||||||||||||||||| ||  ||||| |||||||||||  ||||||||||| ||||    
T  4322365 atacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcagaa 4322422  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 6600959 - 6601051
Alignment:
Q  19 tactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgc 111  Q
    ||||||||||||| |  ||||||   |||||||| |||||||| || |  || ||||||||||||||||||||  | |||| |||||||||||    
T  6600959 tactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatgc 6601051  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 20935367 - 20935182
Alignment:
Q  2 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 101  Q
    |||| ||||||||||| ||||||| ||||| | || || |  ||||||||| |||||||| | ||  || |||||||| ||||||||||||||||||| |    
T  20935367 aagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatcg 20935268  T
Q  102 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaag 187  Q
    ||||||||||| ||  ||||||   ||| ||  |||||||||||||||||| || |||||| |||||||||||  | |||||||||    
T  20935267 aagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaacacctgcagtcagatactgaag 20935182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 20953905 - 20953689
Alignment:
Q  2 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattg 101  Q
    |||| ||||||||||| ||||||| ||||| | || || |  ||||||||| |||||||| | ||  || |||||||| ||||||||||| | ||  | |    
T  20953905 aagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtcg 20953806  T
Q  102 aagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaat 201  Q
    |||||||||| |||  |||||||  ||| ||  |||||||||||||||||| ||  ||||| |||||||||||  ||||||||||| | |  ||||||||    
T  20953805 aagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactgaagcacaccagaaaaat 20953706  T
Q  202 tgctataaatcagaata 218  Q
      || ||||||||||||    
T  20953705 gactctaaatcagaata 20953689  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 231
Target Start/End: Complemental strand, 20924324 - 20924137
Alignment:
Q  44 aagattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggt 143  Q
    |||||||||||||||| | | ||  || ||| |||| ||||||||| ||||||| |||||||||| || ||   ||||| |||||| ||| |||||| ||    
T  20924324 aagattaggcgagcttttgagcaagcaaagaacagccgaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagt 20924225  T
Q  144 gtaggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaattgctataaatcagaatatgatgtttataat 231  Q
    ||||||||| ||  |||||| ||||||||||  ||||||||||| | || |||| | |  || ||||||||||||| |||||| ||||    
T  20924224 gtaggaagctttactggcaccacacctgcagccaaatactgaagcaaaacagaagagtgactctaaatcagaatataatgtttctaat 20924137  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 202
Target Start/End: Complemental strand, 21238373 - 21238216
Alignment:
Q  45 agattaggcgagcttctaaacacacatagagcagctgaaatttccttcaagtcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtg 144  Q
    |||||||| |||||||| | ||  || |||||||| || ||||||||||||||||||||||||||| ||||| ||||||   ||| ||  ||||||||||    
T  21238373 agattaggtgagcttctgagcaagcagagagcagccgagatttccttcaagtcattgaagtttatgtttaacaaaagatggcttagatgaatacaaggtg 21238274  T
Q  145 taggaagcattgttggcacaacacctgcagataaatactgaagtagaaaagaaaaatt 202  Q
    |||||||| ||  ||| || ||||||||||  ||||||||||| |||| |||| ||||    
T  21238273 taggaagctttactggaacgacacctgcagccaaatactgaagcagaacagaagaatt 21238216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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