View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_2 (Length: 566)
Name: NF10184_low_2
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 273 - 552
Target Start/End: Complemental strand, 32809751 - 32809464
Alignment:
| Q |
273 |
gaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaacatagcacaattcgcaagaaggcgtcaatgtggtgcnnnnnnnn---agtgga |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32809751 |
gaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaacatagcacaattcgcaagaaggcgtcaatgtggtgctttttttttttagtgga |
32809652 |
T |
|
| Q |
370 |
agtggctctgta-----gctaatgttactcttagacaaccttcagctcttggtgctgttgtagcacttcacaggattgagattttgtccataactaggaa |
464 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32809651 |
agtggctctgtatagcagctaatgttactcttagacaaccttcagctcttggtgctgttgtagcacttcacaggattgagattttgtccttaactaggaa |
32809552 |
T |
|
| Q |
465 |
gtttctacccggtcatgcttcaattggccttatactgtatctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaact |
552 |
Q |
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|||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32809551 |
gtttctactcggtcatgcttcgattggccttatagtgtacctggatggaggtcaaggtcacgtagttaaaggttttgttgttggaact |
32809464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 32810784 - 32810666
Alignment:
| Q |
1 |
aataacaactaatatataaaaattacttaatagcatatttacactaataatttattaattcaactaagcatcctctgtcatttagttctctatcatgttt |
100 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32810784 |
aataataactaatatataaaaattactaaatagcatatttacactaataatttattaattcaactaagcatcctctgtcatttagttctctatcatgttt |
32810685 |
T |
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| Q |
101 |
taaatatatgtaactctag |
119 |
Q |
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| T |
32810684 |
taaatatatgtaactctag |
32810666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 186 - 258
Target Start/End: Complemental strand, 32810599 - 32810527
Alignment:
| Q |
186 |
caaccaaccggtaacaatgtttgttgggttggatagtgtgctagtagctgaaatggttacaacttacaaggtt |
258 |
Q |
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| T |
32810599 |
caaccaaccggtaacaatgtttgttgggttggatagtgtgctagtagctgaaatggttacaacttacaaggtt |
32810527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 364 - 483
Target Start/End: Complemental strand, 32803102 - 32802980
Alignment:
| Q |
364 |
agtggaagtggctctgtagctaatgttactcttagacaaccttcagctcttggtgctgttgtagcacttca---caggattgagattttgtccataacta |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| |||||||||||||| |||| |
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| T |
32803102 |
agtggaagtggctctgtagctaatgttactcttagacaaccttcagctcctggtgccgttgtagcacttcatggcaggtttgagattttgtccttaaccg |
32803003 |
T |
|
| Q |
461 |
ggaagtttctacccggtcatgct |
483 |
Q |
| |
|
||| |||||||| |||| |||| |
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| T |
32803002 |
ggacatttctacctggtcctgct |
32802980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 32803294 - 32803243
Alignment:
| Q |
270 |
gtcgaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
321 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32803294 |
gtcgaagttggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
32803243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 16578604 - 16578652
Alignment:
| Q |
273 |
gaaattggtaaccgaagaccaagaggaagaccacctggatccaaaaaca |
321 |
Q |
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|||||||| |||||||||||||||||||||||||| || || ||||||| |
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| T |
16578604 |
gaaattggaaaccgaagaccaagaggaagaccacccggttcaaaaaaca |
16578652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 7599007 - 7599078
Alignment:
| Q |
1 |
aataacaactaatatataaaaattacttaatagcatatttacactaataatttattaattcaactaagcatcct |
74 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||| |||||||||||||| | |||||||||||||| |
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| T |
7599007 |
aataacaactaatatataaaaa-tactaaataacatattta-actaataatttattgacacaactaagcatcct |
7599078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 321
Target Start/End: Complemental strand, 3332434 - 3332399
Alignment:
| Q |
286 |
gaagaccaagaggaagaccacctggatccaaaaaca |
321 |
Q |
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|||||||||||||||||||| ||||||||||||||| |
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| T |
3332434 |
gaagaccaagaggaagaccagctggatccaaaaaca |
3332399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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