View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10184_low_24 (Length: 229)
Name: NF10184_low_24
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_24 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 49297941 - 49297732
Alignment:
| Q |
6 |
aagaagatcataataatcaacaagaaaggaagcataacgatgtggcttatttatagagctacttggagtaactaactatctttctattctcgttaccact |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49297941 |
aagaagatcataataatcaacaagaaaggaagcataacgaagtggcttatttatagagctacttggagtaactaactatctttctattctagttaccact |
49297842 |
T |
|
| Q |
106 |
agataacctattaactaactgtagttgattaactatagtgtaataatgccgtcttcgagtgtcggtaatgaccacataacatacaattggatccttcaac |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
49297841 |
agataacctattaact--------------aactatagtgtaataatgccgtcttcgagtgtcggtaatgaccacatagcatacaattggatccttcaac |
49297756 |
T |
|
| Q |
206 |
atacatttgatgaccctacttctt |
229 |
Q |
| |
|
||||||||||||| ||||| |||| |
|
|
| T |
49297755 |
atacatttgatgaacctacgtctt |
49297732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 31337901 - 31337802
Alignment:
| Q |
47 |
gtggcttatttatagagctacttggagtaactaactatctttctattctcgttaccactagataacctattaactaactgtagttgattaactatagtgt |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| |||||||| || ||||| || || |||||||| | ||| |
|
|
| T |
31337901 |
gtggcttatttatagagctacttggagtaactaa----ctttctactcttgttaccactaggtaacctatcaagtaactataattaattaactacaatgt |
31337806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 31135462 - 31135503
Alignment:
| Q |
109 |
taacctattaactaactgtagttgattaactatagtgtaata |
150 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
31135462 |
taacctatcaactaactctggttgattaactatagtgtaata |
31135503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University