View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10184_low_3 (Length: 489)
Name: NF10184_low_3
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Original strand, 39491260 - 39491717
Alignment:
| Q |
16 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39491260 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
39491359 |
T |
|
| Q |
116 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39491360 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgac |
39491459 |
T |
|
| Q |
216 |
caaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattgagaggt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39491460 |
caaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattgagaggt |
39491559 |
T |
|
| Q |
316 |
gtattaaggaggttttggaaggtccaaatgctggtgagattaagaagagggttacggaaattaaagagttggcaagaaaaactttacaggaaggtggtag |
415 |
Q |
| |
|
|||||| ||||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39491560 |
gtattagggaggttttggaagggccacatgctggtgagattaagaagagggctacagaaattaaagagttggcaagaaaaactttacaggaaggtggtag |
39491659 |
T |
|
| Q |
416 |
ttctagcaagaacttcaataagtttatcagtgaattggttgttaagaacgatccaagg |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39491660 |
ttctagcaagaacttcaataagtttatcagtgaattggttgttaagaacgatccaagg |
39491717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 39287775 - 39287318
Alignment:
| Q |
16 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39287775 |
caaaggatgctgcttatgaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgca |
39287676 |
T |
|
| Q |
116 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttattggttggccatcttggactgac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||| ||| |
|
|
| T |
39287675 |
ccctgctgttgcttgttttctaagtcattgtggttggaactcaacacttgagacattgataactggtgtgcctgttatttgctggccttcttggcttgat |
39287576 |
T |
|
| Q |
216 |
caaccaacaaatgctatgcttattcagaatgtgtttaggaatggtgtaaaagtgaaatatggggaagatggggttgcaagtgtagaagagattgagaggt |
315 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39287575 |
caaccaacaaatgcaatgcttattgagaatgtgtttaggaatggggtgaaagtgaattatggggaagatggggttgcaagtgtaaaagagattgagaggt |
39287476 |
T |
|
| Q |
316 |
gtattaaggaggttttggaaggtccaaatgctggtgagattaagaagagggttacggaaattaaagagttggcaagaaaaactttacaggaaggtggtag |
415 |
Q |
| |
|
|||||| ||||||| ||||||| || |||||||||||||||||||| |||| || |||||||||||| | ||||||||| |||| |||||| |||||| |
|
|
| T |
39287475 |
gtattagggaggttatggaagggcctaatgctggtgagattaagaaaagggctatggaaattaaagattctgcaagaaaagctttggaggaagatggtag |
39287376 |
T |
|
| Q |
416 |
ttctagcaagaacttcaataagtttatcagtgaattggttgttaagaacgatccaagg |
473 |
Q |
| |
|
|||||| || || |||||| | ||||| ||||||||| ||||||| ||| || ||||| |
|
|
| T |
39287375 |
ttctagtaataatttcaatcaatttataagtgaattgattgttaaaaacaattcaagg |
39287318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 473
Target Start/End: Original strand, 39491729 - 39491776
Alignment:
| Q |
426 |
aacttcaataagtttatcagtgaattggttgttaagaacgatccaagg |
473 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
39491729 |
aacttcaataagtttaccagggaattggtttttaagaacgatccaagg |
39491776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 5906115 - 5905995
Alignment:
| Q |
33 |
gaattaccaaaagagtttttgaaagagactgaagggagaggtttggttgtgaaatggtgtgcacaggagaaggtgttaatgcaccctgctgttgcttgtt |
132 |
Q |
| |
|
||||| ||||||| ||||||| |||| || |||| |||||||||||||| | ||||||| || |||||||| |||| |||||||| || ||||||| |
|
|
| T |
5906115 |
gaatttccaaaagggtttttggaagaaacaaaaggaagaggtttggttgtaacatggtgtaatcaagagaaggttttaagccaccctgcagtggcttgtt |
5906016 |
T |
|
| Q |
133 |
ttctaagtcattgtggttgga |
153 |
Q |
| |
|
|| | |||||||||||||| |
|
|
| T |
5906015 |
ttttgtctcattgtggttgga |
5905995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University