View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_4 (Length: 445)
Name: NF10184_low_4
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 428
Target Start/End: Complemental strand, 37802011 - 37801625
Alignment:
| Q |
22 |
gaaggatagtctcatctttccttagtgtatcaataaaatacttctcaaagttactgtttttt-----agcaattcaaagttacttaaatattagtaaact |
116 |
Q |
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| T |
37802011 |
gaaggatagtctcatctttccttagtgtatccataaattacttctcaaagttaatgtttttttttttagcaattcaaagttacttaaatattagtaaa-- |
37801914 |
T |
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| Q |
117 |
aaatggatattttctggtataatggatttctgattaatatccaagattaatgtgcatannnnnnnnactcttctcttctttgatatagaatacgtgtcct |
216 |
Q |
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| T |
37801913 |
---tggatattttctggtataaaggatttctgattaatatccaagattaatgtgcatattttttttactcttctcttctttgatatagaatacgtgtcct |
37801817 |
T |
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| Q |
217 |
cctctcatccttttcaaaactcattacaatatggcacaatagtttaattcgaaaagtttgactcttctctaccatttatcatttatttgactgttccctc |
316 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37801816 |
cctctcatcattttcaaaactcattacaatatggcacaatagtttaattcgaaaagtttgactct--tctaccatttatcatttatttgactgttccctc |
37801719 |
T |
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| Q |
317 |
aattttctaaagcttccttgctcattgaagattgaaggaagactcactcaaagagctatgatcaatacaaggaagccatggttctgtctttctcttcttg |
416 |
Q |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37801718 |
aattttctaaagcttccttgctcattgaagattga------------------agccatgatcaatacaaggaagccatggttctgtctttctcttcttg |
37801637 |
T |
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