View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_5 (Length: 376)
Name: NF10184_low_5
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 43540166 - 43540511
Alignment:
| Q |
1 |
agtatatgatgatatcaacaaaaactataatccaaaattaaactaaattcttgttctttcaggtaactgcagaaacgttgattctagagagcaaggacaa |
100 |
Q |
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| T |
43540166 |
agtatatgatgatatcaacaaaaactataatccaaaattaaactaaattcttgttctttcaggtaactgcagaaacgttgattctagagagcaaggacaa |
43540265 |
T |
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| Q |
101 |
aggaaaagccattctggatctcatctctattcttaacataaccaaccttgtattgggagtcaaaaagctacggtatataatatatgctactacaactcaa |
200 |
Q |
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| T |
43540266 |
aggaaaagccattctggatctcatctctattcttaacataaccaaccttgtattgggagtcaaaaagctacggta---------------tacaactcaa |
43540350 |
T |
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| Q |
201 |
ttagtgacaatattgtcagtaacatgcatggttaaggaatatttatcttctttaactaattaatgatgttaaattatgtatatgaattaacaggcgcaat |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43540351 |
ttagtgacaatattgtcactaacatgcatggttaaggaatatttatcttctttaactaattaatgatgttaaattatgtatatgaattaacaggcgcaat |
43540450 |
T |
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| Q |
301 |
gataaattaagggaaggagagtttgtgaagaaaaatgcaccaaagacatgtgatgttacat |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43540451 |
gataaattaagggaaggagagtttgtgaagaaaaatgcaccaaagacatgtgatgttacat |
43540511 |
T |
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