View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_6 (Length: 356)
Name: NF10184_low_6
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 1793673 - 1794016
Alignment:
| Q |
1 |
ctagaatttgcaaactttgtctgccttaaagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttga |
100 |
Q |
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| T |
1793673 |
ctagaatttgcaaactttgtctggcttaaagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttga |
1793772 |
T |
|
| Q |
101 |
gttacaaatagaacttatgagtcaggctcaatttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1793773 |
gttacaaatagaacttatgagtcaggctcaatttagtgtagtagagtccttt-aatgagagactcatgtaccttctttttcatcttttatcaatcaatat |
1793871 |
T |
|
| Q |
201 |
actttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggcaggaca--tggagtagtctgtcgagtttt |
298 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |
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| T |
1793872 |
actttttatctgtcctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggcacgacatgtgaagtagtctgtcgagtttt |
1793971 |
T |
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| Q |
299 |
aatatgctctatgtctctcttatgcatactatctttccgcctttg |
343 |
Q |
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| T |
1793972 |
aatatgctctatgtctctcttatgcatactatctttcctcctttg |
1794016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 2007511 - 2007587
Alignment:
| Q |
29 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
105 |
Q |
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| T |
2007511 |
aagtatttttttagtgcctttcaagttcccaatccagtattggaaattattttctaaaacttgtacacttgagttac |
2007587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 2007641 - 2007708
Alignment:
| Q |
131 |
atttagtgtagtagagtcctttaaatgagagactcatgtaccttctttttcatcttttatcaatcaata |
199 |
Q |
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| T |
2007641 |
atttagtgcagtagaaccctataaatcagagactcatgtatcttctttttcatc-tttatcaatcaata |
2007708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 2020712 - 2020788
Alignment:
| Q |
29 |
aagtatttgtctagtgcctttcaagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttac |
105 |
Q |
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| T |
2020712 |
aagtatttgtttagtacatttaaagttcccagtttagtattggaagttagtttctaaaacttgtacacttgagttac |
2020788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 2012992 - 2013074
Alignment:
| Q |
26 |
ttaaagtatttgtctagtgccttt-caagttgtcaatctagtattggaagtttgattctaaaacttgtacacttgagttacaa |
107 |
Q |
| |
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||||||||||||| |||||||||| | |||| |||||||||||||||||| | |||||||| |||| |||||||| ||||| |
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| T |
2012992 |
ttaaagtatttgtttagtgccttttctagttcctaatctagtattggaagttagtttctaaaatttgtgcacttgagctacaa |
2013074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 2007731 - 2007807
Alignment:
| Q |
196 |
aatatactttttatctgccctttttgtacgaacctcccccctttgatttttggatttgtaacaattgtgtgtaggca |
272 |
Q |
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| T |
2007731 |
aatatactttttatttttcctatgtatacaaaccttccccctttgatttatagatttgtaacaattgcatgtaggca |
2007807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 20954211 - 20954255
Alignment:
| Q |
292 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
336 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20954211 |
gagttttaatatgctctatgtccctcttatgcatactatctttcc |
20954255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 20935971 - 20936014
Alignment:
| Q |
292 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
336 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
20935971 |
gagttttaatatgctctatgcct-tcttatgcatactatctttcc |
20936014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 39275112 - 39275156
Alignment:
| Q |
292 |
gagttttaatatgctctatgtctctcttatgcatactatctttcc |
336 |
Q |
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||||||||||| | | |||||||||||||||||||| |||||||| |
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| T |
39275112 |
gagttttaataggttatatgtctctcttatgcatacaatctttcc |
39275156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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