View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10184_low_8 (Length: 322)
Name: NF10184_low_8
Description: NF10184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10184_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 6 - 306
Target Start/End: Complemental strand, 30612785 - 30612485
Alignment:
| Q |
6 |
caaaggatctccatcattgttgcttattctcttttctctccttcatctgcaatatttttcatatcattctgtttgaaattaatcatatcatcatggattc |
105 |
Q |
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| T |
30612785 |
caaaggatctccatcattgttgcttattctcttttctctccttcatctgcaatatttttcatatcattctgtttgaaattaatcatatcatcatggattc |
30612686 |
T |
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| Q |
106 |
atcatctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcnnnnnnnggtcacaaa |
205 |
Q |
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| T |
30612685 |
atcatctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcaaaaaaaggtcacaaa |
30612586 |
T |
|
| Q |
206 |
atcacttttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcatgttg |
305 |
Q |
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| T |
30612585 |
atcacttttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcatgttg |
30612486 |
T |
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| Q |
306 |
a |
306 |
Q |
| |
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| |
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| T |
30612485 |
a |
30612485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 104 - 306
Target Start/End: Complemental strand, 30595339 - 30595137
Alignment:
| Q |
104 |
tcatcatctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcnnnnnnnggtcaca |
203 |
Q |
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| T |
30595339 |
tcatcatctcctttacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcaaaaaaaggtcaca |
30595240 |
T |
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| Q |
204 |
aaatcacttttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcatgt |
303 |
Q |
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| T |
30595239 |
aaatcacctttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcacttttatcaccatcaaagttcctcatgt |
30595140 |
T |
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| Q |
304 |
tga |
306 |
Q |
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||| |
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| T |
30595139 |
tga |
30595137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 120 - 269
Target Start/End: Complemental strand, 30614672 - 30614523
Alignment:
| Q |
120 |
acatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcnnnnnnnggtcacaaaatcacttttttcac |
219 |
Q |
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| T |
30614672 |
acatagcaatgtatccattgtttgccatgggccacctaacagcattccttcacctagcaaataagttagcaaaaaaaggccacaaaatcacattcttcac |
30614573 |
T |
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| Q |
220 |
acctaaatcagcacaatccaaattagaaccattcaatctctacccacaat |
269 |
Q |
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| T |
30614572 |
acctaaatcagcacaatccaaattagaaccattcaatctccactcacaat |
30614523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 280
Target Start/End: Original strand, 35008878 - 35009061
Alignment:
| Q |
97 |
catggattcatcatctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagcnnnnnnn |
196 |
Q |
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|||||| ||| ||||| | || ||||||||||||| |||||||||||||||||| ||| |||||||| |||||||| |||||||| |||| |
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| T |
35008878 |
catggagtcaccatcttctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctctcaaacaaattagccaaaagg |
35008977 |
T |
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| Q |
197 |
ggtcacaaaatcacttttttcacacctaaatcagcacaatccaaattagaaccattcaatctctacccacaattaatcactttt |
280 |
Q |
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|| ||||||||| |||| |||| || || | ||||| |||||||||||| |||||| || || ||| | |||||||||||| |
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| T |
35008978 |
ggacacaaaatctctttcttcattcccaagaaaacacaaaccaaattagaacaattcaacctttatccaaatttaatcactttt |
35009061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 35037055 - 35036963
Alignment:
| Q |
97 |
catggattcatcatctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccattccttcatctagcaaacaaactagc |
189 |
Q |
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| T |
35037055 |
catggagtcaccatcttctttgcacatagcaatgtttccatggtttgcaatgggacacttaactccatatcttcatctctcaaacaaattagc |
35036963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 35033165 - 35033218
Alignment:
| Q |
111 |
ctccattacacatagcaatgtatccatggtttgcaatgggccaccaaactccat |
164 |
Q |
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| T |
35033165 |
ctcctttacacatagcaatgtttccatggtttgctatgggacacttaactccat |
35033218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 36288452 - 36288497
Alignment:
| Q |
119 |
cacatagcaatgtatccatggtttgcaatgggccaccaaactccat |
164 |
Q |
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||||||||||||| |||||||||||||||||| |||| || ||||| |
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| T |
36288452 |
cacatagcaatgtctccatggtttgcaatgggacacctaattccat |
36288497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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