View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_high_14 (Length: 250)

Name: NF10185_high_14
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_high_14
NF10185_high_14
[»] chr2 (1 HSPs)
chr2 (8-240)||(20526961-20527206)


Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 20526961 - 20527206
Alignment:
Q  8 atagatctatagagaaaaacacaaagcaaaacgaagaagcaagtgttaccttaaagaaaaaggtagttggtgaaagaaagagaagttggtgcttgaacag 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20526961 atagatctatagagaaaaacacaaagcaaaacaaagaagcaagtgttaccttaaagaaaaaggtagttggtgaaagaaagagaagttggtgcttgaacag 20527060  T
Q  108 attgaacccgctttgctatggttaagtctgatcaagcgttgtgagtccaaagagaagacttggaactcaatttataggcaaaagtctcaaa--------- 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  20527061 attgaacccgctttgctatggttaagtctgatcaagcgttgtgagtccaaagagaagacttggaactcaatttataggcaaaagtctcaaatgagagagg 20527160  T
Q  199 ----tgaggtagttgaagtgtagttaatgactcaaatgcccctttg 240  Q
        ||||||||||||| ||||||||||||||||||||||||||||    
T  20527161 ttgctgaggtagttgaaatgtagttaatgactcaaatgcccctttg 20527206  T

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