View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10185_high_16 (Length: 244)
Name: NF10185_high_16
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10185_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 35863762 - 35863985
Alignment:
| Q |
4 |
ccggcagcaacttcccttgcggatcataaagtatgttgtctagcctaccatcgccaaattcttcagaaccctatacatttggagattttatcaggaatta |
103 |
Q |
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| T |
35863762 |
ccggcagcaacttcccttgcgaatcataaagtatgttgtctagcctaccatcgccaaattcttcagaacccttcacatttggagtttttatcaggaatta |
35863861 |
T |
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| Q |
104 |
agtttttatccttctaaagtatggaaaagaaaaccaaaagatggatgtaggagactaacatgtcctgtgaactcattattttgtactcctggaggtgatg |
203 |
Q |
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| T |
35863862 |
agtttttatccttctaaagtatggaaaagaaaaccaaaagatggatgtaggagactaacatgtcctgtgaactcattattttgtactcctggaggtgatg |
35863961 |
T |
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| Q |
204 |
tagatgatggttctggaggatggt |
227 |
Q |
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| T |
35863962 |
tagatgatggttctggaggatggt |
35863985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 227
Target Start/End: Original strand, 34813368 - 34813552
Alignment:
| Q |
38 |
gttgtctagcctaccatcgccaaattcttcagaaccctatacatttggagattttatcaggaattaagtttttatccttctaaagtatggaaaagaaaac |
137 |
Q |
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|||||||| ||||||||| |||||||||| |||||| ||||||| |||||| ||||||| | ||||||| || |||||||| ||||||||||||||| |
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| T |
34813368 |
gttgtctaacctaccatc---aaattcttcaaaacccttcacatttgtagattt-atcaggactgaagtttt-atacttctaaaatatggaaaagaaaac |
34813462 |
T |
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| Q |
138 |
caaaagatggatgtaggagactaacatgtcctgtgaactcattattttgtactcctggaggtgatgtagatgatggttctggaggatggt |
227 |
Q |
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| T |
34813463 |
caaaagatggatgtaggagactaacatatctttcgaagccattattatgtactcctagaggtgatgttgatgatggttctggaggatggt |
34813552 |
T |
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