View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10185_high_3 (Length: 474)
Name: NF10185_high_3
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10185_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 10442518 - 10442059
Alignment:
| Q |
1 |
aaggtgtgttagatgcatcagtagtcacagacacagaataaggcataggtgt-catctcagtttcagactgatgtagggctttgcttgaattagcaggac |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | | || ||| ||||||||||||||||||||||||||| |
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| T |
10442518 |
aaggtgtgttagatgcatcagtagtcacagacacagaataaggcataggtgtgccacccaa---cag------gtagggctttgcttgaattagcaggac |
10442428 |
T |
|
| Q |
100 |
tatcttgcctttgaattgattctgtcaaacttctcctgcaaactggggccaccgaagaacttagcaccccagaatattgtgactgnnnnnnnnn------ |
193 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10442427 |
tatcttgcctttgaattgattccgtcaaacttctcctgcaaactggggccaccgaagaacttagcaccccagaatattgtgactgaaaaaaaaaaaaata |
10442328 |
T |
|
| Q |
194 |
---tgtgtgattcaaagatttaaaacaaacattaaattcattaataagtagataatttgaatatgtatataacctgcataatagcttgatcactgcttat |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10442327 |
aagtgtgtgattcaaagatttaaaacaaacattaaattcattaataagtagataatttgaatatgtatataacctgcataatagcttgatcactgcttat |
10442228 |
T |
|
| Q |
291 |
ctgctcttctgccctgccagatgtagagggggacttgatctgcaaatcctgaaatgataaaaacttataagggcatggacatgcacagcttagataagca |
390 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10442227 |
ctgctcttctgcccagccagatgtggagggggacttgatctgcaaatcctgaaataataaaaacttataagagcatggacatgcacagcttagataagca |
10442128 |
T |
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| Q |
391 |
tatttgttctgcatacagctcaagttcttgtcaccaaatggctgtttcactgccactaatggtgatcaa |
459 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
10442127 |
tatttgttctgcatacagctcaagttcttgtcaccaaatggctgtttcactggcactaatggtgctcaa |
10442059 |
T |
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