View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_high_5 (Length: 434)

Name: NF10185_high_5
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_high_5
NF10185_high_5
[»] chr6 (1 HSPs)
chr6 (17-418)||(8159034-8159435)
[»] chr4 (3 HSPs)
chr4 (136-346)||(18701668-18701878)
chr4 (366-418)||(18701878-18701930)
chr4 (103-136)||(18701618-18701651)
[»] chr3 (2 HSPs)
chr3 (53-331)||(4084080-4084374)
chr3 (367-418)||(4084389-4084440)
[»] chr8 (11 HSPs)
chr8 (53-331)||(44312207-44312489)
chr8 (53-325)||(44301308-44301596)
chr8 (145-330)||(43896073-43896255)
chr8 (139-325)||(44306520-44306704)
chr8 (169-309)||(43895568-43895705)
chr8 (367-418)||(43896271-43896322)
chr8 (367-418)||(44312504-44312555)
chr8 (169-309)||(44305992-44306129)
chr8 (15-50)||(44312137-44312172)
chr8 (16-50)||(43895856-43895890)
chr8 (18-47)||(44306284-44306313)
[»] chr5 (1 HSPs)
chr5 (153-328)||(35856845-35857017)
[»] chr7 (1 HSPs)
chr7 (225-268)||(15040305-15040348)


Alignment Details
Target: chr6 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 8159435 - 8159034
Alignment:
Q  17 cagagataggatcaagtgttaaatgcagaacacagtatcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgca 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8159435 cagagataggatcaagtgttaaatgcagaacacagtatcaataattaagcaacagattcagcataaaaaataagttataaataagaaacaaaccattgca 8159336  T
Q  117 aagctaataaaccaaaccaattatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159335 aagctaataaaccaaaccaattatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacat 8159236  T
Q  217 cggcagcagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagc 316  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8159235 cagcagcagaagtcattatatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagc 8159136  T
Q  317 ttcatcaacttccttgatttcattaacttcctcactctcatcatgttcgcgtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacattt 416  Q
    |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8159135 ttcatcaacttccttgattttatcaacttcctcactctcatcatgttcacgtctcttacccaaacgaggaatctcaatcttcttaccagtgttaacattt 8159036  T
Q  417 gt 418  Q
    ||    
T  8159035 gt 8159034  T

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Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 136 - 346
Target Start/End: Original strand, 18701668 - 18701878
Alignment:
Q  136 attatttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattat 235  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  |||||||||||||||||||||||||||||||   ||||||||||||| |    
T  18701668 attatttctctagaatgaatcaattcacaccatttgaaaatgtatgcccggaatcttttgagaccgaataagcaggaacatc---agcagaagtcattgt 18701764  T
Q  236 atatctaacagacccat---cggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttccttg 332  Q
    |||||||||||||||||   ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  18701765 atatctaacagacccattggcggtaaaagtatctccagattcaagatgagcatcaaaaacaaaaacaatttctccagcatgagcttcatcaacttcctcg 18701864  T
Q  333 atttcattaacttc 346  Q
    |||| |||||||||    
T  18701865 attttattaacttc 18701878  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 18701878 - 18701930
Alignment:
Q  366 cgtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 418  Q
    |||||||| |||||||||||||||| |||||||||||| ||||||||||||||    
T  18701878 cgtctcttgcccaaacgaggaatctgaatcttcttaccagtgttaacatttgt 18701930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 18701618 - 18701651
Alignment:
Q  103 aacaaaccattgcaaagctaataaaccaaaccaa 136  Q
    ||||||||||||||||||||||||||||||||||    
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaa 18701651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 53 - 331
Target Start/End: Original strand, 4084080 - 4084374
Alignment:
Q  53 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt-------------a 139  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| | |||||||| || ||||||||| |             |    
T  4084080 atcaataattaagcaacaaattcaccataaaaaataagttataaataagcaacaaaccatagtaaagctaacaagccaaaccaactggtaagtaggatca 4084179  T
Q  140 tttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatat 239  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||   |||||||||||| |||||    
T  4084180 tttctctggaatgaatccattcacaccatttgaaaatttctctcctgaatcctttgagaccgaataagcaggaacatcg---gcagaagtcattgtatat 4084276  T
Q  240 ctaacagacccatcggtaaaagtatctccagattcaagatgagcatca------aacacaaaaacaatttctccagcatgagcttcatcaacttcctt 331  Q
    |||| |||||| || ||||||||||||||||||| ||||  |||||||      ||||||| ||||| ||||||||||||||||||||||||| ||||    
T  4084277 ctaatagacccgtcagtaaaagtatctccagatttaagaatagcatcaaactttaacacaataacaagttctccagcatgagcttcatcaactgcctt 4084374  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 4084389 - 4084440
Alignment:
Q  367 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 418  Q
    ||||||||  |||||||||||||| |||||||||||| ||||||||||||||    
T  4084389 gtctcttaaacaaacgaggaatcttaatcttcttaccggtgttaacatttgt 4084440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 53 - 331
Target Start/End: Original strand, 44312207 - 44312489
Alignment:
Q  53 atcaataattaagcaacagattcaccataaaaaa-taagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt------------- 138  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||  ||| || ||| || ||||||||| |                 
T  44312207 atcaataattaagcaacaaattcaccataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaagccaaaccaactggcgaagtaggat 44312306  T
Q  139 -atttctctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatat 237  Q
     | |||||| ||||||||| |||||||||||||||||||||||||||| || |||||||||| ||        ||||||||||||   ||||||||||||    
T  44312307 caattctcttgaatgaatccattcacaccatttgaaaatttctctccagaaacttttgagacgga--------gaacatcggcag---aagtcattatat 44312395  T
Q  238 atctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcctt 331  Q
    |||||||||||||||| ||||||||||||||||||  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44312396 atctaacagacccatcagtaaaagtatctccagatctaagaatagcaccaaacacaaaaacaatttctccagcatgagcttcatcaacttcctt 44312489  T

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Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 53 - 325
Target Start/End: Original strand, 44301308 - 44301596
Alignment:
Q  53 atcaataattaagcaacagattcaccataaaaaataagttataaataagaaacaaaccattgcaaagctaataaaccaaaccaatt-------------- 138  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||| |||||||||| || |||||| || |                  
T  44301308 atcaataattaagcagcagatttaccataaaaaataagttataaataagcaacaaaacatagcaaagctaacaagccaaacaaactgggtaagtaggatc 44301407  T
Q  139 atttctctagaat-----gaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcatt 233  Q
    ||||| || ||||     |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||   ||||||| ||||    
T  44301408 atttcactggaatggaatgaatcaattcacaccatttgaaaatttctctccagaatcttttgacaccgaataagtaggaacatcg---gcagaagacatt 44301504  T
Q  234 atatatctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaac 325  Q
     ||||||||||||||||||| ||||||||||||||||||| ||||  |  | | ||||||| |||||||||||| |||||||||||||||||    
T  44301505 gtatatctaacagacccatcagtaaaagtatctccagatttaagaacaatagctaacacaataacaatttctccggcatgagcttcatcaac 44301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 145 - 330
Target Start/End: Original strand, 43896073 - 43896255
Alignment:
Q  145 ctagaatgaatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaac 244  Q
    |||||||||||| || ||||||||||||||||||||||||| |||||| |||||  |||||| |||||||||||||||   |||||||| ||||||||||    
T  43896073 ctagaatgaatccatccacaccatttgaaaatttctctccagaatcttatgagatagaataatcaggaacatcggcag---aagtcattgtatatctaac 43896169  T
Q  245 agacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttcct 330  Q
    ||||||||| || |||||||||||||||| ||||  |||||| ||||||| || ||| ||||||||||||||||||||||||||||    
T  43896170 agacccatcagtgaaagtatctccagatttaagaatagcatctaacacaataataatctctccagcatgagcttcatcaacttcct 43896255  T

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Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 139 - 325
Target Start/End: Original strand, 44306520 - 44306704
Alignment:
Q  139 atttctctagaatgaatcaattcacaccatttgaaaatt-tctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatat 237  Q
    ||||| |||||||||||| ||||||||||||||||||   |||||||| |||||| |||||| ||||||| ||||||||||||||   |||||||| |||    
T  44306520 atttccctagaatgaatccattcacaccatttgaaaaaactctctccagaatcttatgagacagaataagtaggaacatcggcag---aagtcattgtat 44306616  T
Q  238 atctaacagacccatcggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaac 325  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||  | ||||||||||||||||||||||||||||||    
T  44306617 atctaacagacccatcagtaaaagtatctccagatttaagaagagcatcgaacaacataacaatttctccagcatgagcttcatcaac 44306704  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 43895568 - 43895705
Alignment:
Q  169 ttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaacagacccatcggtaaaagtatctcc 268  Q
    ||||||||| | ||||| ||||||||||||||||| ||| | ||| || | |||   | ||||||  |||||||||||||||||| | ||||||||||||    
T  43895568 ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacag---aggtcattgaatatctaacagacccatcagcaaaagtatctcc 43895664  T
Q  269 agattcaagatgagcatcaaacacaaaaacaatttctccag 309  Q
    |||||||   | |||| ||||||||  |||||||| |||||    
T  43895665 agattcacactcagcaccaaacacagcaacaatttgtccag 43895705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 43896271 - 43896322
Alignment:
Q  367 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 418  Q
    ||||||||  |||||||||||||| |||||||||||| ||||||||||||||    
T  43896271 gtctcttaaacaaacgaggaatctgaatcttcttaccagtgttaacatttgt 43896322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 418
Target Start/End: Original strand, 44312504 - 44312555
Alignment:
Q  367 gtctcttacccaaacgaggaatctcaatcttcttacccgtgttaacatttgt 418  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||| |||||    
T  44312504 gtctcttacccaaacaaggaatcttaatcttcttaccagtgttaacgtttgt 44312555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 44305992 - 44306129
Alignment:
Q  169 ttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaacagacccatcggtaaaagtatctcc 268  Q
    ||||||||| | ||||| ||||||||||||||||| ||| | ||| || | |||   | ||||||  ||||||||| |||||||| | ||||||||||||    
T  44305992 ttgaaaattgccctccagaatcttttgagaccgaacaagtaagaatattgacag---aggtcattgaatatctaacggacccatcagcaaaagtatctcc 44306088  T
Q  269 agattcaagatgagcatcaaacacaaaaacaatttctccag 309  Q
    |||||||   | |||| ||||||||  |||||||| |||||    
T  44306089 agattcacactcagcaccaaacacagcaacaatttgtccag 44306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 44312137 - 44312172
Alignment:
Q  15 agcagagataggatcaagtgttaaatgcagaacaca 50  Q
    ||||||||||||||||| ||||||||||||||||||    
T  44312137 agcagagataggatcaactgttaaatgcagaacaca 44312172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 43895856 - 43895890
Alignment:
Q  16 gcagagataggatcaagtgttaaatgcagaacaca 50  Q
    ||||||||||||||| |||||||||||||||||||    
T  43895856 gcagagataggatcaggtgttaaatgcagaacaca 43895890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 44306284 - 44306313
Alignment:
Q  18 agagataggatcaagtgttaaatgcagaac 47  Q
    ||||||||||||||||||||||||||||||    
T  44306284 agagataggatcaagtgttaaatgcagaac 44306313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 328
Target Start/End: Complemental strand, 35857017 - 35856845
Alignment:
Q  153 aatcaattcacaccatttgaaaatttctctccacaatcttttgagaccgaataagcaggaacatcggcagcagaagtcattatatatctaacagacccat 252  Q
    |||| ||||||| |||||||| ||| ||| | | |||||||||||||||||||| || |||||| |   |||||||||||     |||||||||||||||    
T  35857017 aatccattcacaacatttgaagattgctcgctagaatcttttgagaccgaataatcaagaacattg---gcagaagtcatagcccatctaacagacccat 35856921  T
Q  253 cggtaaaagtatctccagattcaagatgagcatcaaacacaaaaacaatttctccagcatgagcttcatcaacttc 328  Q
    | ||||| || ||||| | | ||  || | ||||| | |||| |||||||| |||||||||||| |||| ||||||    
T  35856920 cagtaaatgtttctcctggtgcacaatcaacatcacatacaacaacaatttgtccagcatgagcctcattaacttc 35856845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 268
Target Start/End: Original strand, 15040305 - 15040348
Alignment:
Q  225 gaagtcattatatatctaacagacccatcggtaaaagtatctcc 268  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||    
T  15040305 gaagtcattgtatatttaacagacccatcagtaaaagtatctcc 15040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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