View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_high_8 (Length: 326)

Name: NF10185_high_8
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_high_8
NF10185_high_8
[»] chr2 (2 HSPs)
chr2 (1-310)||(37726191-37726500)
chr2 (263-310)||(41322217-41322264)
[»] chr8 (1 HSPs)
chr8 (73-173)||(26525924-26526028)
[»] chr4 (3 HSPs)
chr4 (261-310)||(44523854-44523903)
chr4 (38-75)||(25899068-25899105)
chr4 (13-50)||(34810607-34810644)
[»] chr6 (1 HSPs)
chr6 (38-75)||(16488429-16488466)
[»] chr5 (2 HSPs)
chr5 (38-75)||(21814444-21814481)
chr5 (262-310)||(12503202-12503250)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 37726500 - 37726191
Alignment:
Q  1 atgtagcagatcacctaggataattttgtaaaggatgcaagtaataatccctcagatgagttttttactcataagaaacggtaaaatattccaaaacaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37726500 atgtagcagatcacctaggataattttgtaaaggatgcaagtaataatccctcagatgagttttttactcataagaaacggtaaaatattccaaaacaag 37726401  T
Q  101 tgtgcattgaaaagatggtcaaggaagtgaaattgtcgtcttggaattggcttagctttaaagcaaatagccttggtttggtgttcaaatccaagtgctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37726400 tgtgcattgaaaagatggtcaaggaagtgaaattgtcgtcttggaattggcttagctttaaagcaaatagccttggtttggtgttcaaatccaagtgctt 37726301  T
Q  201 aaggaagtagttgatccatggagggctggtctgcaatatctcgtttttctgcatctcttttctaatgaaaataaaaatatgatatgaacaatggacagtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37726300 aaggaagtagttgatccatggagggctggtctgcaatatctcgtttttctgcatctcttttctaatgaaaataaaaatatgatatgaacaatggacagtg 37726201  T
Q  301 gctagaatgt 310  Q
    ||||||||||    
T  37726200 gctagaatgt 37726191  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 41322264 - 41322217
Alignment:
Q  263 taatgaaaataaaaatatgatatgaacaatggacagtggctagaatgt 310  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  41322264 taatgaaaataaaaataagatatgaacaatggacagtggctggaatgt 41322217  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 26525924 - 26526028
Alignment:
Q  73 aagaaacggtaaaatattccaaaacaag----tgtgcattgaaaagatggtcaaggaagtgaaattgtcgtcttggaattggcttagctttaaagcaaat 168  Q
    |||||||  |||||||||||||||||||    | ||||||||||||||| |  ||||||| ||||||||||||||||||||||| |||||||||  ||||    
T  26525924 aagaaacaataaaatattccaaaacaaggaaatatgcattgaaaagatgattgaggaagtaaaattgtcgtcttggaattggctaagctttaaataaaat 26526023  T
Q  169 agcct 173  Q
    |||||    
T  26526024 agcct 26526028  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 44523854 - 44523903
Alignment:
Q  261 tctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgt 310  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  44523854 tctaatgaaaataaaaataagatatgaacaatggacagtggctggaatgt 44523903  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 25899105 - 25899068
Alignment:
Q  38 caagtaataatccctcagatgagttttttactcataag 75  Q
    |||||||||||||||||||| |||||||||||||||||    
T  25899105 caagtaataatccctcagataagttttttactcataag 25899068  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 34810607 - 34810644
Alignment:
Q  13 acctaggataattttgtaaaggatgcaagtaataatcc 50  Q
    |||||||||||||||||||||||||| | |||||||||    
T  34810607 acctaggataattttgtaaaggatgcgaataataatcc 34810644  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 16488466 - 16488429
Alignment:
Q  38 caagtaataatccctcagatgagttttttactcataag 75  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16488466 caagtaataatccctcagataagttttttactcataag 16488429  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 21814444 - 21814481
Alignment:
Q  38 caagtaataatccctcagatgagttttttactcataag 75  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21814444 caagtaataatccctcagataagttttttactcataag 21814481  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 12503202 - 12503250
Alignment:
Q  262 ctaatgaaaataaaaatatgatatgaacaatggacagtggctagaatgt 310  Q
    ||||||||| ||||||||||||||| ||||||||| || ||||||||||    
T  12503202 ctaatgaaagtaaaaatatgatatggacaatggactgtagctagaatgt 12503250  T

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