View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_low_10 (Length: 383)

Name: NF10185_low_10
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_low_10
NF10185_low_10
[»] chr7 (2 HSPs)
chr7 (20-217)||(8692798-8692995)
chr7 (231-375)||(8692178-8692322)
[»] chr3 (41 HSPs)
chr3 (231-369)||(28137145-28137283)
chr3 (17-113)||(28149080-28149176)
chr3 (231-352)||(28479061-28479182)
chr3 (17-122)||(28082885-28082990)
chr3 (22-122)||(28184952-28185052)
chr3 (231-350)||(26138411-26138530)
chr3 (32-122)||(28054571-28054661)
chr3 (32-122)||(28064996-28065086)
chr3 (19-110)||(28480584-28480675)
chr3 (240-347)||(28508201-28508308)
chr3 (19-110)||(28509767-28509858)
chr3 (240-350)||(26231835-26231945)
chr3 (22-120)||(27919514-27919612)
chr3 (19-120)||(27979639-27979740)
chr3 (49-122)||(28161137-28161210)
chr3 (240-343)||(26126275-26126378)
chr3 (240-340)||(26176329-26176429)
chr3 (266-347)||(26203828-26203909)
chr3 (31-120)||(28003369-28003458)
chr3 (43-103)||(28507044-28507104)
chr3 (170-217)||(28135293-28135340)
chr3 (33-120)||(28151113-28151200)
chr3 (17-79)||(28134783-28134845)
chr3 (254-347)||(26109519-26109612)
chr3 (171-215)||(28054831-28054875)
chr3 (171-215)||(28065256-28065300)
chr3 (236-311)||(27458047-27458122)
chr3 (25-120)||(28036606-28036701)
chr3 (17-107)||(26114053-26114143)
chr3 (231-313)||(27357069-27357151)
chr3 (31-120)||(17745307-17745396)
chr3 (31-120)||(19046627-19046716)
chr3 (238-306)||(28680491-28680559)
chr3 (19-118)||(11420196-11420295)
chr3 (238-313)||(28163442-28163517)
chr3 (238-288)||(11422017-11422067)
chr3 (238-272)||(27921042-27921076)
chr3 (238-268)||(28057978-28058008)
chr3 (238-268)||(28068403-28068433)
chr3 (239-313)||(28187453-28187527)
chr3 (238-306)||(28152487-28152555)
[»] scaffold0257 (2 HSPs)
scaffold0257 (19-113)||(18502-18596)
scaffold0257 (239-313)||(19894-19968)
[»] chr2 (3 HSPs)
chr2 (231-313)||(22400983-22401065)
chr2 (231-313)||(22792687-22792769)
chr2 (231-313)||(22966160-22966242)


Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 8692995 - 8692798
Alignment:
Q  20 aacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaa 119  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8692995 aacaacgtccacttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaa 8692896  T
Q  120 atatattttatttcaagtgtttcttagaaatatgctgcatgcaactaaattttacatttttatgacacgcaattagttggagggttctactacatcag 217  Q
    | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8692895 aaatattttatttcaagtgtttcttacaaatatgctgcatgcaactaaattttacatttttatgatacgcaattagttggagggttctactacatcag 8692798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 231 - 375
Target Start/End: Complemental strand, 8692322 - 8692178
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctat 330  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8692322 ttttaagtcaacatgtggaggatcttaagcatcaattgacatgctccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccttat 8692223  T
Q  331 tggctattagactatattttcttgtacttctatttcatctctgct 375  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  8692222 tggctattagactatattttcttgtacttctatttcatctttgct 8692178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 28137145 - 28137283
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctat 330  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  28137145 ttttaagtcaacatgtggaagatcttaagcatcaattgacatcctctaaagctgttttgaagaatataattcaacaagaggcggttttaagtgcacctat 28137244  T
Q  331 tggctattagactatattttcttgtacttctatttcatc 369  Q
    ||| |||||||||||||||||  |||||| |||||||||    
T  28137245 tggttattagactatattttcaagtacttttatttcatc 28137283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 28149080 - 28149176
Alignment:
Q  17 accaacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaa 113  Q
    ||||||||||| | |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28149080 accaacaacgttcacttggagaaactgatactgccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcatataaagctaaa 28149176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 231 - 352
Target Start/End: Complemental strand, 28479182 - 28479061
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctat 330  Q
    |||| |||||||||||||| ||||||||||| |||||||||| |||  ||||||||||| ||| ||| |||||||||||||| ||||||||||||||| |    
T  28479182 ttttaagtcaacatgtggaagatcttaagcaacaattgacatcctctgaagctgttttggagactatcattcaacaagaggcggttttaagtgccccttt 28479083  T
Q  331 tggctattagactatattttct 352  Q
     |||||||||| ||||||||||    
T  28479082 cggctattagattatattttct 28479061  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 28082885 - 28082990
Alignment:
Q  17 accaacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaa 116  Q
    ||||||||||||   ||||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||||| | |||||||||||||||||||||||     
T  28082885 accaacaacgtctagttggagaaactgatactgccgtcaaaccttttcaggtaaatcatgcaatatcataccaatacattgtgcatataaagctaaaaat 28082984  T
Q  117 gaaata 122  Q
    ||||||    
T  28082985 gaaata 28082990  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 28184952 - 28185052
Alignment:
Q  22 caacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaat 121  Q
    |||||||  ||||||||| |||||| | ||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||||    
T  28184952 caacgtctacttggagaacctgatactaccgtcaaaccttctcaggtaaatcatgtaatgtcgtaccaccgcgttgtgcatataaagctaaaaatgaaat 28185051  T
Q  122 a 122  Q
    |    
T  28185052 a 28185052  T

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Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 26138530 - 26138411
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctat 330  Q
    |||| |||||||||||||| ||||||||||| || ||||||| |||  ||| ||||||| ||  ||| |||||||||||||  ||||| |||||||||||    
T  26138530 ttttaagtcaacatgtggaagatcttaagcaacagttgacatcctctgaagttgttttggagcgtatcattcaacaagaggtggttttgagtgcccctat 26138431  T
Q  331 tggctattagactatatttt 350  Q
    ||||||||||||||||||||    
T  26138430 tggctattagactatatttt 26138411  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 28054571 - 28054661
Alignment:
Q  32 ttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaata 122  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||| ||||||    
T  28054571 ttggagaaattgatactgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaaaatgaaata 28054661  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 32 - 122
Target Start/End: Original strand, 28064996 - 28065086
Alignment:
Q  32 ttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaata 122  Q
    ||||||||| ||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |||||| ||||||    
T  28064996 ttggagaaattgatactgccgtcaaaccttctcaggtaaatcatgtattattgtaccactgcatcgtgcatataaagataaaaatgaaata 28065086  T

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Target: chr3; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 28480675 - 28480584
Alignment:
Q  19 caacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagct 110  Q
    ||||||||||  ||||||||| | |||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  28480675 caacaacgtctacttggagaagccgatactcccgtcaaaccttctcaggtaaatcatgtaatatcgtaccaccgcattgtgcataaaaagct 28480584  T

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Target: chr3; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 347
Target Start/End: Complemental strand, 28508308 - 28508201
Alignment:
Q  240 aacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctattggctatta 339  Q
    |||| ||||| ||||||||||| |||||||||| |||  ||||||||||| ||| ||| ||||||||||||| |||||||  ||||||||| ||||||||    
T  28508308 aacaggtggaagatcttaagcaacaattgacatcctctgaagctgttttggagagtatcattcaacaagaggtagttttacatgcccctatcggctatta 28508209  T
Q  340 gactatat 347  Q
    ||||||||    
T  28508208 gactatat 28508201  T

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Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 28509858 - 28509767
Alignment:
Q  19 caacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagct 110  Q
    ||||||||||  ||||||||| | |||  ||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  28509858 caacaacgtctacttggagaagccgattctgccgtcaaaccttctcaggtaaatcaagtaatatcgtaccaccgcattgtgcatataaagct 28509767  T

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Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 240 - 350
Target Start/End: Complemental strand, 26231945 - 26231835
Alignment:
Q  240 aacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctattggctatta 339  Q
    |||||||||| | |||||||||||||||||||| |||  ||||| ||||| ||| ||| | |||||||||||  | ||||||||||||| ||||||||||    
T  26231945 aacatgtggaagttcttaagcatcaattgacatcctctcaagctattttggagagtatcaatcaacaagaggtggctttaagtgcccctgttggctatta 26231846  T
Q  340 gactatatttt 350  Q
    |||||||||||    
T  26231845 gactatatttt 26231835  T

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Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 27919514 - 27919612
Alignment:
Q  22 caacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 120  Q
    |||||||| |||||||||| ||||| | ||| |||||||||||| | |||| ||||||||| |||||||  ||||||| ||||||||||||||||||||    
T  27919514 caacgtccacttggagaaattgatactaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaaaaagaaa 27919612  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 27979639 - 27979740
Alignment:
Q  19 caacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaaga 118  Q
    ||||||||||| |||||||||||||||  | ||| |||||||||||  | |||| ||||||||| |||||||  ||||||| ||||||||||||||||||    
T  27979639 caacaacgtccacttggagaaactgatgctaccgtcaaaccttctccagaaaataatgtaatatagtaccacctcattgtgaatataaagctaaaaaaga 27979738  T
Q  119 aa 120  Q
    ||    
T  27979739 aa 27979740  T

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Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 28161137 - 28161210
Alignment:
Q  49 gccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaata 122  Q
    |||| ||||||||||||||||||||||||||| ||||| ||| || ||||||||||||||||||||| ||||||    
T  28161137 gccgtcaaaccttctcaggtaaatcatgtaatgtcgtaacaccgcgttgtgcatataaagctaaaaatgaaata 28161210  T

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Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 240 - 343
Target Start/End: Complemental strand, 26126378 - 26126275
Alignment:
Q  240 aacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctattggctatta 339  Q
    |||||||||| | |||||||||||||||| ||| |||  ||||||||||| ||| ||| | |||||||||||  | ||||||||||||| ||||||||||    
T  26126378 aacatgtggaagttcttaagcatcaattggcatcctctcaagctgttttggagagtatcaatcaacaagaggtggctttaagtgcccctgttggctatta 26126279  T
Q  340 gact 343  Q
    ||||    
T  26126278 gact 26126275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 26176429 - 26176329
Alignment:
Q  240 aacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctattggctatta 339  Q
    |||||||||| | |||||||||||||||| ||| |||  ||||||||||| ||| ||| | |||||||||||  | ||||||||||||| ||||||||||    
T  26176429 aacatgtggaagttcttaagcatcaattggcatcctctcaagctgttttggagagtatcaatcaacaagaggtggctttaagtgcccctgttggctatta 26176330  T
Q  340 g 340  Q
    |    
T  26176329 g 26176329  T

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Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 26203909 - 26203828
Alignment:
Q  266 ttgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctattggctattagactatat 347  Q
    ||||||| |||  ||||||||||| ||| ||| |||||||||||||  ||||| ||| ||||||||||||||||||||||||    
T  26203909 ttgacatcctctgaagctgttttggagagtatcattcaacaagaggtggttttcagttcccctattggctattagactatat 26203828  T

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Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 28003369 - 28003458
Alignment:
Q  31 cttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 120  Q
    |||||||||||||||  | ||| |||||||||||| | |||| ||||||||| |||||||  ||| ||||||||||| ||||||||||||    
T  28003369 cttggagaaactgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcatcgtgcatataaatctaaaaaagaaa 28003458  T

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Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 28507104 - 28507044
Alignment:
Q  43 gatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcata 103  Q
    |||| ||||| ||||||||||| |||||||||||||||||||||||||  |||||||||||    
T  28507104 gatactgccgtcaaaccttctccggtaaatcatgtaatatcgtaccaccacattgtgcata 28507044  T

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Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 28135293 - 28135340
Alignment:
Q  170 tttacatttttatgacacgcaattagttggagggttctactacatcag 217  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  28135293 tttacatttttatgatatgcaattagttggagggttctactacatcag 28135340  T

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Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 28151113 - 28151200
Alignment:
Q  33 tggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 120  Q
    |||||||| ||||  | ||| |||||||||||| | |||| ||||||||| |||||||  ||||||||||||||| ||||||||||||    
T  28151113 tggagaaattgatgctaccgtcaaaccttctcaagaaaataatgtaatatagtaccacctcattgtgcatataaatctaaaaaagaaa 28151200  T

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Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 28134783 - 28134845
Alignment:
Q  17 accaacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaa 79  Q
    ||||||||||| | |||||||||||||||| | ||| |||||||||||||||||||| |||||    
T  28134783 accaacaacgttcacttggagaaactgatacttccgtcaaaccttctcaggtaaatcgtgtaa 28134845  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 26109612 - 26109519
Alignment:
Q  254 cttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggcagttttaagtgcccctattggctattagactatat 347  Q
    ||||| || |||||||||| |||  ||||| | ||| ||| ||| |||||||||||||  |||||||| ||||||||||||||||||| |||||    
T  26109612 cttaatcaacaattgacatcctctgaagctttcttggagagtatcattcaacaagaggtggttttaagggcccctattggctattagattatat 26109519  T

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Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 28054831 - 28054875
Alignment:
Q  171 ttacatttttatgacacgcaattagttggagggttctactacatc 215  Q
    |||||||||||||| | ||||||||||||||||||||||||||||    
T  28054831 ttacatttttatgatatgcaattagttggagggttctactacatc 28054875  T

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Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 28065256 - 28065300
Alignment:
Q  171 ttacatttttatgacacgcaattagttggagggttctactacatc 215  Q
    |||||||||||||| | ||||||||||||||||||||||||||||    
T  28065256 ttacatttttatgatatgcaattagttggagggttctactacatc 28065300  T

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Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 27458122 - 27458047
Alignment:
Q  236 agtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagagg 311  Q
    |||||| ||||||| |||||||||||||||||||||| |||  |  |||||||||||| ||| |||||| ||||||    
T  27458122 agtcaaaatgtggaagatcttaagcatcaattgacatcctcggagactgttttgaagagtattattcaaaaagagg 27458047  T

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Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 28036606 - 28036701
Alignment:
Q  25 cgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 120  Q
    ||||| |||||||||||||||  | ||| |||| ||||||  | |||| | ||||||| |||||||  ||||||||||||||||||||||| ||||    
T  28036606 cgtccacttggagaaactgatgctaccgtcaaagcttctccagaaaataacgtaatatagtaccacctcattgtgcatataaagctaaaaatgaaa 28036701  T

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Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 26114143 - 26114053
Alignment:
Q  17 accaacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaa 107  Q
    ||||||||| ||| |||||||||||||||| | ||  |||||||||||| | | || ||||||||| ||||||   |||||||||||||||    
T  26114143 accaacaacatccacttggagaaactgatactaccatcaaaccttctcaagaagataatgtaatatagtaccatctcattgtgcatataaa 26114053  T

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Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 27357069 - 27357151
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggca 313  Q
    |||| |||||||||||||| ||||||||||||||| |||||  |||  |  |||||||||||| ||| |||||| ||||||||    
T  27357069 ttttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagaggca 27357151  T

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Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 17745396 - 17745307
Alignment:
Q  31 cttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 120  Q
    |||||||||||||||  | ||| |||||||||||||| |||| ||||||||| |||||||  ||||||  ||||||  ||||||| ||||    
T  17745396 cttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaa 17745307  T

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Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 19046716 - 19046627
Alignment:
Q  31 cttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaagaaa 120  Q
    |||||||||||||||  | ||| |||||||||||||| |||| ||||||||| |||||||  ||||||  ||||||  ||||||| ||||    
T  19046716 cttggagaaactgatgctaccgtcaaaccttctcaggaaaataatgtaatatagtaccacctcattgtttatataagactaaaaatgaaa 19046627  T

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Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 28680559 - 28680491
Alignment:
Q  238 tcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaaca 306  Q
    |||||||||||| |||||||||||||| |||||||  ||  ||||||||||| ||| ||| ||||||||    
T  28680559 tcaacatgtggaagatcttaagcatcatttgacatcttctgaagctgttttggagactatcattcaaca 28680491  T

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Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 11420196 - 11420295
Alignment:
Q  19 caacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaaaaaga 118  Q
    ||||||||||| ||||| |||||||||  | ||| ||||||||  |||| ||||   ||||||| ||||||   ||||||||||||||| ||||||||||    
T  11420196 caacaacgtccacttggtgaaactgatgctaccgtcaaacctttgcaggaaaatacagtaatatagtaccatctcattgtgcatataaaactaaaaaaga 11420295  T

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Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 313
Target Start/End: Original strand, 28163442 - 28163517
Alignment:
Q  238 tcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggca 313  Q
    ||||||||||| ||||||||||||||||||| | | |||  ||||||||||| |||| || | |||||| ||||||    
T  28163442 tcaacatgtggcggatcttaagcatcaattggcttcctctgaagctgttttgcagaacatcactcaacaggaggca 28163517  T

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Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 11422017 - 11422067
Alignment:
Q  238 tcaacatgtggaggatcttaagcatcaattgacatactccaaagctgtttt 288  Q
    |||||| |||||||||||||||||||||||| | | |||| ||||||||||    
T  11422017 tcaacacgtggaggatcttaagcatcaattggcttcctccgaagctgtttt 11422067  T

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Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 272
Target Start/End: Original strand, 27921042 - 27921076
Alignment:
Q  238 tcaacatgtggaggatcttaagcatcaattgacat 272  Q
    |||||||||||| ||||||||||||||||||||||    
T  27921042 tcaacatgtggaagatcttaagcatcaattgacat 27921076  T

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Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 28057978 - 28058008
Alignment:
Q  238 tcaacatgtggaggatcttaagcatcaattg 268  Q
    |||||||||||||||||||||||||||||||    
T  28057978 tcaacatgtggaggatcttaagcatcaattg 28058008  T

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Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Original strand, 28068403 - 28068433
Alignment:
Q  238 tcaacatgtggaggatcttaagcatcaattg 268  Q
    |||||||||||||||||||||||||||||||    
T  28068403 tcaacatgtggaggatcttaagcatcaattg 28068433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 28187453 - 28187527
Alignment:
Q  239 caacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggca 313  Q
    |||||||||||||||||||||||||||||| | | ||   ||||||||||| |||| || | |||||| ||||||    
T  28187453 caacatgtggaggatcttaagcatcaattggcttcctgtgaagctgttttgcagaacatcactcaacaggaggca 28187527  T

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Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 28152487 - 28152555
Alignment:
Q  238 tcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaaca 306  Q
    ||||||| | || |||||||||||||||||||||| |||  |||||| |||| ||| ||| ||||||||    
T  28152487 tcaacatcttgaagatcttaagcatcaattgacatcctctgaagctgatttggagactatcattcaaca 28152555  T

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Target: scaffold0257 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 18502 - 18596
Alignment:
Q  19 caacaacgtccgcttggagaaactgatattgccggcaaaccttctcaggtaaatcatgtaatatcgtaccactgcattgtgcatataaagctaaa 113  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  18502 caacaacgtccacttggagaaactgatattgccgtcaaaccttctcaggtaaatcatgtaatatcctacaaccgcattgtgcatataaagctaaa 18596  T

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Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 19894 - 19968
Alignment:
Q  239 caacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggca 313  Q
    ||||||||| |||||||||||||||||||| | | |||  ||||||||||| |||  || | |||||||||||||    
T  19894 caacatgtgaaggatcttaagcatcaattggcttcctctgaagctgttttgcagagcatcactcaacaagaggca 19968  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 22400983 - 22401065
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggca 313  Q
    |||| |||||||||||||| ||||||||||||||| |||||  |||  |  |||||||||||| ||| |||||| ||||||||    
T  22400983 ttttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagaggca 22401065  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 22792687 - 22792769
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggca 313  Q
    |||| |||||||||||||| ||||||||||||||| |||||  |||  |  |||||||||||| ||| |||||| ||||||||    
T  22792687 ttttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagaggca 22792769  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 22966160 - 22966242
Alignment:
Q  231 ttttcagtcaacatgtggaggatcttaagcatcaattgacatactccaaagctgttttgaagaatataattcaacaagaggca 313  Q
    |||| |||||||||||||| ||||||||||||||| |||||  |||  |  |||||||||||| ||| |||||| ||||||||    
T  22966160 ttttaagtcaacatgtggaagatcttaagcatcaactgacaacctctgagactgttttgaagagtatcattcaagaagaggca 22966242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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